Phytophthora sojae: PHYSODRAFT_519698
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Entry
PHYSODRAFT_519698 CDS
T03459
Name
(RefSeq) hypothetical protein
KO
K12627
U6 snRNA-associated Sm-like protein LSm8
Organism
psoj
Phytophthora sojae
Pathway
psoj03018
RNA degradation
psoj03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
psoj00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
PHYSODRAFT_519698
09123 Folding, sorting and degradation
03018 RNA degradation
PHYSODRAFT_519698
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psoj03019
]
PHYSODRAFT_519698
03041 Spliceosome [BR:
psoj03041
]
PHYSODRAFT_519698
Messenger RNA biogenesis [BR:
psoj03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
PHYSODRAFT_519698
mRNA degradation factors
5'-3' decay
Lsm complex
PHYSODRAFT_519698
Spliceosome [BR:
psoj03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
PHYSODRAFT_519698
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
Motif
Other DBs
NCBI-GeneID:
20660209
NCBI-ProteinID:
XP_009534064
JGI:
Physo3_519698
UniProt:
G5A076
LinkDB
All DBs
Position
Unknown
AA seq
88 aa
AA seq
DB search
LVETISVITNDGRNIIGVLKGFDQCVNVILDDSFERVFSLKEPVEAVELGLYIVRGDNIS
VIGGVPENIREQVIDDQTRAAPLKPLVH
NT seq
267 nt
NT seq
+upstream
nt +downstream
nt
cttgtagagaccatttcggtcatcacgaacgacggccgcaacatcatcggcgtgctcaag
ggcttcgaccagtgcgtgaacgtgatcctggacgacagtttcgagcgcgtgttctcgctc
aaggagccggtggaagccgtggagctcgggctctacatcgtgcgcggcgacaacatctcg
gtgatcggcggcgtgcccgagaacatccgagagcaggtgatcgacgaccagacgcgtgcg
gccccactaaagccgctcgtccattaa
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integrated database retrieval system