Phytophthora sojae: PHYSODRAFT_528925
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Entry
PHYSODRAFT_528925 CDS
T03459
Name
(RefSeq) hypothetical protein
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
psoj
Phytophthora sojae
Pathway
psoj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psoj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PHYSODRAFT_528925
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psoj03019
]
PHYSODRAFT_528925
03041 Spliceosome [BR:
psoj03041
]
PHYSODRAFT_528925
03009 Ribosome biogenesis [BR:
psoj03009
]
PHYSODRAFT_528925
03016 Transfer RNA biogenesis [BR:
psoj03016
]
PHYSODRAFT_528925
Enzymes [BR:
psoj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
PHYSODRAFT_528925
Messenger RNA biogenesis [BR:
psoj03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
PHYSODRAFT_528925
Spliceosome [BR:
psoj03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
PHYSODRAFT_528925
Complex C
U4/U6.U5 tri-SnRNP related factors
PHYSODRAFT_528925
Ribosome biogenesis [BR:
psoj03009
]
Eukaryotic type
Pre-60S particles
Helicases
PHYSODRAFT_528925
Transfer RNA biogenesis [BR:
psoj03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
PHYSODRAFT_528925
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
nSTAND3
DUF6505
ATPase_2
Motif
Other DBs
NCBI-GeneID:
20661299
NCBI-ProteinID:
XP_009536796
JGI:
Physo3_528925
UniProt:
G5AB85
LinkDB
All DBs
Position
Unknown
AA seq
1056 aa
AA seq
DB search
MADEELDLFGAFDDATATLTAEEQAATSAKRKEAPAPAANDDKAASPPAKKQQQQQPQSQ
SDGRPASTALKVVEGKRIDATPVDGSDKGSGGVVSTGTQQKNLISFSVYPPDYEMTPTAG
AAAENPAKTYPFTLDPFQQQAVDYIEAGESVLVSAHTSAGKTAVAEYAIAKSLRDKQRVI
YTSPIKALSNQKYRDLEEEFGDVGLMTGDITINPSATCLIMTTEILRSMLYRGSEIMREV
AWVIYDEIHYMRDKERGVVWEESIILLPHKVRFVFLSATIPNSKEFAGWICHIHHQPCHV
VYTDYRPTPLQHYIFPAGGNGLHLVVDEKGKFREDNFQKAIATLSASVDDAAAELASYGS
NTKRRKAQKSNPKKKVGTDVFRIVKLIMERQYDPVIIFSFSKRECESYALLMSKLDFNTE
EEKQSVDQLFKNAMDSLSDDDRALPQVDSILPLLRRGIGIHHGGLLPILKEVIEILFGEG
LLKCLFATETFSMGLNMPAKTVVFTNCRKYDGKDFRWITAGEYIQMSGRAGRRSLDARGI
VIQMLSEQMEPQVAKGILYGQADPLFSTFHLGYNMLLNLMRVEDADPEYMIKQSFHQFQN
EQAAPALEEALERAKEEKDQIVIKNEEEVAQYYYLSRSLVRLKEEFLAIRNKPDYVVRFL
NGGRLVKLYCPDSDDGTTKPKWDWGVVVNFTTKNASDSTSATPDTIVHVLLNCVANNGNA
KSNDATNSSTASELPTPAPEGMMGLSSSTTYEMKICPVPLEMLDLLSSLRVYIPKDLRTL
ESRQTVGKSVKEVLRRFPQGVPLLDPREDMDIQDEQFARVIEKTVEAEKKLKSSAFHNAA
DKEARFALYNLKMESEAKMRELERKIKESKSLVLRDDLRRRRRVLRRLEFVDKEGVIQRK
GRTACEVSTTDELLVTEMIFNGQFNDLSVNDTVALLSCLINTEKKKDSDKPPQAESLEIP
VRQLRESAQRIAKVMQDAKITVDVDEYAGAFNTSLVDVVIAWCQGAKFSQICKMSDAFEG
TIIRCLRRLEELLRQLTLAAHSIGDRDIVFAASLYL
NT seq
3171 nt
NT seq
+upstream
nt +downstream
nt
atggccgacgaggagctggacctgttcggcgccttcgacgacgcgaccgccacgctcacg
gccgaggagcaggccgccacctccgccaagcgcaaggaggcgcccgcgcccgccgccaac
gacgacaaggcggcgtccccgcccgccaagaagcagcagcagcaacaaccccaaagtcag
agtgatggtcgtccggcctccacggcgctcaaggtcgtggagggcaagcgcatcgacgcg
acgcccgtggacggcagcgacaagggctcgggaggcgtcgtgtccaccggcacgcagcag
aagaacctcatctcgttctccgtgtacccgccggactacgagatgacgcccacggcgggc
gccgccgccgagaacccggccaagacgtacccgttcacgctggacccgttccagcagcag
gccgtggactacatcgaggccggcgagtcggtgctggtctcggcccacacgtcggccggc
aagacggccgtggccgagtacgccatcgccaagtcgctgcgcgacaagcagcgcgtcatc
tacacgtcccccatcaaggcgctgagcaaccagaagtaccgcgacctggaggaggagttc
ggcgacgtgggcctcatgacgggcgacatcaccatcaacccgtccgcgacgtgtctgatc
atgacgacggagattctcaggagcatgctctaccgaggctcggagatcatgcgcgaagtg
gcgtgggtcatctacgacgagatccactacatgcgcgacaaggagcgcggcgtcgtctgg
gaggagagtatcatcctgctgccgcacaaggtgcgttttgtgtttttgtcggccacgatc
cccaactccaaggagttcgccggctggatctgccacatccaccaccagccctgccacgtc
gtgtacacggactaccgtcccacgcccctgcagcactacatcttccccgctggaggcaac
ggactgcacctggtggtggacgagaagggcaaattccgtgaagacaacttccagaaggcc
attgccacgctgtcggcgtcggtggacgacgcggcggcggagctggcgtcctacggcagc
aacaccaagcgacgcaaggcccagaagagcaaccccaagaagaaagtcggcacggacgta
ttccgcatcgtgaagctcatcatggagcggcagtatgaccccgtgatcatcttctccttc
agcaagcgcgagtgcgagtcgtacgcgctgctcatgtccaagctcgacttcaacacggag
gaggagaagcagtccgtggaccagctcttcaagaacgccatggactcgctctcggacgac
gatcgcgcgctgccacaggtggactcgatcctgccgctgcttcgtcgtggcatcggtatt
caccacggtggtctgctgcctattctcaaggaagtgatcgagattctgttcggcgaaggt
ctgctcaagtgtctgtttgccaccgagactttctcaatgggtctgaacatgcctgccaag
acggtcgtgttcaccaactgccgcaagtacgacggcaaggacttccgctggatcactgcc
ggcgagtacattcagatgtctggtcgtgctggtcgacgttcgctggatgcacgtggtatc
gttattcagatgctgagcgagcagatggagccgcaggtggccaagggcattctctacggc
caagccgacccgcttttcagcacattccacctcggctacaacatgctgctcaacttgatg
cgtgtggaagatgccgacccggagtacatgatcaagcagtctttccaccagttccagaac
gagcaggccgcgcctgcgctggaggaagcgcttgagcgcgccaaggaggagaaagaccag
atcgtgatcaagaacgaggaagaagtcgcgcagtactattacctgtccaggtcgctcgtg
cgtcttaaagaggagttcctggctattcgcaacaagccggactatgtggtgcgcttcctc
aacggtggtcgattggtgaagctttactgcccggacagcgatgatggcacgactaaaccc
aagtgggactggggcgttgtcgtcaacttcaccaccaagaacgccagcgactcgacctct
gcgacgcctgacacgattgtgcacgttctcctgaactgcgtggcaaacaatggcaacgcg
aagtcgaacgatgccaccaacagcagcactgcctcggagctgcccactccggccccggaa
ggaatgatgggtctgtcgtcgtcaactacctacgagatgaagatctgccctgtgccgctc
gagatgctggacctgctgtcgtcgctgcgtgtgtatattcccaaggacttgcgtacgtta
gagagccgtcaaactgtaggcaagtcggtcaaggaggtgctgcgccgattccctcagggt
gtgccgcttttggacccgcgtgaagacatggacatccaggacgagcagttcgcacgtgtg
attgaaaagacggtcgaggcagagaagaagctgaagagctcggccttccacaatgcagct
gacaaggaggctagatttgccctgtacaacctgaagatggagagcgaggccaagatgcgt
gagctggagcgtaagatcaaggagtccaagtccttggtgctgcgtgacgacctgcgccgt
cgccgacgtgtgctgcggagacttgaattcgtggacaaggagggtgtgattcagcgtaag
ggccgtacggcttgcgaggtgtctacgacggacgagcttttggtgacggaaatgatcttc
aacggtcagttcaacgacttgtcggtgaacgatacagtggcgcttttgagctgtttgatt
aacacggagaagaagaaggacagcgacaaaccgccgcaggccgaaagcttagagatccct
gttcgccagctgcgcgaaagtgcgcagcgcattgcaaaggtgatgcaggacgccaaaatt
actgtcgatgtcgatgagtacgccggtgcgttcaacacaagcctggtggacgtggtgatt
gcctggtgccagggggccaagttctcgcagatttgcaagatgtcggacgcgttcgagggc
acgattatccgttgtttgcgtcgccttgaggagttgctgcgccaacttacgctggctgcg
cactccatcggtgaccgcgacatcgtgttcgccgcctccctctacctgtag
DBGET
integrated database retrieval system
