Phytophthora sojae: PHYSODRAFT_540459
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Entry
PHYSODRAFT_540459 CDS
T03459
Name
(RefSeq) hypothetical protein
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
psoj
Phytophthora sojae
Pathway
psoj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psoj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PHYSODRAFT_540459
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psoj03019
]
PHYSODRAFT_540459
Enzymes [BR:
psoj01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
PHYSODRAFT_540459
Messenger RNA biogenesis [BR:
psoj03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
PHYSODRAFT_540459
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
DUF2179
Motif
Other DBs
NCBI-GeneID:
20662408
NCBI-ProteinID:
XP_009521153
JGI:
Physo3_540459
UniProt:
G4Z0L6
LinkDB
All DBs
Position
Unknown
AA seq
606 aa
AA seq
DB search
MLRAQSSLRRSLLVVARPRRFSSSAASLAADADSKPTDEMNVTRHNFAKCLADLQKDLAL
PTCRFVAIDTEFTGLSPNEFEREQYLDTLEERYRKVKRAGESFLVTQFGLSTVHLDQKDQ
FQIKTWNFYVFPRPYGSLDERFLCQASSLQFLSEHGFDFNKFIGDGIPFVNLAKTPVMKK
RLQRRIDGLTKVNKNLQLSDDGVAFQKDVNEQLDQWIAGGAKKGEKLLVPTRNSFYSMVV
HETVRSKASYLYSEAAEGGVEVSYVSKKIKEELIAAKVKDMRREMDEAIGFSKVIEALSE
SKLPVVGHNALLDFVYVFHQFYKPLPETLAEFKTQLLGLFPTIYDTKHVTLRSPLGDKLK
STGLSSLFEYMRENVKPEPESLIPSDEHFDTYRQALKAEADGNESLLCHEAGFDAFMTAV
CFLGLLAHDAKGELPDQQVPKEGSSARLKVRLEELDSLKNQLNLMISDESFLDLGNVSQT
IDRTRVYRVSSTTKRRIQHVRMEDVFKSSKVQRIVRESDQDAFVVLTEPAEEVNDETKAE
LGVNISTYDEHMAAEAEKARKEKEEADRKLFEKISAARASTSSGETASGDTTAEGPSAVW
NRCTIS
NT seq
1821 nt
NT seq
+upstream
nt +downstream
nt
atgctgcgtgctcagtcgtcgctccgccgctcgctgctcgtcgtcgctcgcccccgccgc
ttcagtagcagcgccgcctccctcgccgccgacgcagactccaagcccacggacgagatg
aacgtgacgcgccacaacttcgccaagtgcctggccgacctgcagaaggacctggcgctg
cccacgtgccgcttcgtggccatcgacacggagttcacgggcctgtcgcccaacgagttc
gagcgcgagcagtacctggacacgctcgaggagcgctaccgcaaggtgaagcgcgcgggc
gagagcttcctcgtcacgcagttcgggctctcgacggtgcacttggaccagaaggaccag
ttccagatcaagacctggaacttctacgtgttcccgcggccctacggctcgctggacgag
cgcttcctgtgccaggcctcgagtctgcagttcctgtcggagcacggcttcgacttcaac
aagttcatcggcgacggcatccccttcgtcaacttggccaagacgccggtcatgaagaag
cgcctgcagcgccgcattgatgggcttacgaaggtgaacaagaacctgcagctctcggac
gacggcgtggccttccagaaggacgtgaacgagcagctggaccagtggatcgccggagga
gccaagaagggcgagaagctgctcgtgcccacccggaactccttctactcgatggttgtg
cacgagactgtgcgctccaaggcgagttacctgtactcggaggctgccgagggcggcgtg
gaggtgtcgtacgtgtccaagaagatcaaggaggagctcattgcggccaaggtcaaggac
atgagacgcgagatggacgaggccatcggcttctccaaggtcatcgaggcgctgagcgag
agcaagctgcctgttgtcggacacaacgcgctgctggactttgtgtacgtgttccaccag
ttctacaagccgctgccggagacgctggcggagttcaagacgcagctgctggggctgttc
cccaccatctacgacaccaagcacgtgacgctgcgctcgcctctcggtgacaagctcaag
tccacgggtctgtcgtctctgttcgagtacatgcgcgagaacgtcaagcctgagcccgag
agcctcatccccagcgacgagcactttgacacgtaccgccaagcgcttaaggctgaggct
gacggcaacgagagcctgctgtgccatgaggctggtttcgacgccttcatgacggctgtg
tgcttcctgggtctgctggctcacgacgccaagggagagctgcccgaccagcaggtgccg
aaggagggcagctctgctcgtcttaaggtccgtctggaggagctggacagcttgaagaac
cagctgaacctcatgatctcggacgagagcttcctcgacttgggcaacgtctcccagacc
atcgaccgcacccgcgtgtaccgcgtgagcagcacgaccaagcgacggatccagcacgtg
cgcatggaggacgtgttcaagtcgtccaaggtgcagcgtatcgtgcgtgagagcgaccag
gacgcgttcgtggtgctcacggagcccgccgaggaggtgaacgacgagaccaaggccgag
ctgggcgtgaacatctccacatacgacgaacacatggctgccgaggccgagaaggctcgt
aaggagaaggaggaagccgaccgcaagctcttcgagaagatctcggctgctcgtgcttca
acatcaagtggcgagaccgcgagcggtgacaccactgccgagggtccgtctgccgtgtgg
aatcgctgcaccatttcatag
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