Candidatus Phytoplasma solani: S284_02630
Help
Entry
S284_02630 CDS
T02881
Symbol
srmB
Name
(GenBank) DEAD box ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
psol
Candidatus Phytoplasma solani
Pathway
psol03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psol00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
S284_02630 (srmB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psol03019
]
S284_02630 (srmB)
03009 Ribosome biogenesis [BR:
psol03009
]
S284_02630 (srmB)
Enzymes [BR:
psol01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
S284_02630 (srmB)
Messenger RNA biogenesis [BR:
psol03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
S284_02630 (srmB)
Ribosome biogenesis [BR:
psol03009
]
Prokaryotic type
rRNA helicases
S284_02630 (srmB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
Pro-kuma_activ
Lgt1_N
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
CCP88200
LinkDB
All DBs
Position
271831..273537
Genome browser
AA seq
568 aa
AA seq
DB search
MIFKKSKKERNEEIMNTLFEQLPILEQTKKALRELNFIEATPIQALVIPEIIQGRDVIGQ
AQTGTGKTFAFGIPIIEKIDHKLAKTQSLILCPTRELTLQVYEELKKLLRFYPEIRIAVV
FGGESYTKQFRALENRPHLIIATPGRAIDHIERGKIDLSALKILTLDEADEMLKMGFQEA
LETILKQIPAERQTVLFSATLPPFIKKIASKYQKDTKILKVPVQNIAVNAIEQFYFLVKE
VDKNKLLVRLLDLKKDHSAILFANTKKDVDEITAYLQDKGFLADAVHGDLKQNQRQYVMN
NFRKGKIQILIATDVAARGIDISDIKMVINYDLPHEDEVYVHRIGRTGRAGKKGLAYSLI
SPRKMSQLKKLEYYLKEKINLLDIPSVDGIKKQILKNFEKKILDIVEKNTQESINYPIIE
ELLQKFSAEQIIQGLLTHISPKERNYSDIFPPRVSFSNNSFVPRRFGESRFYEPRFSNSR
FHDSKASSYSRSDFVEVVINLGKKDNINPPALIKLLKEEFQIYSKNIGNIKHLTHETIFE
VASRFLYQFKNKSNVRFQNKTVIINKKD
NT seq
1707 nt
NT seq
+upstream
nt +downstream
nt
atgatttttaaaaaatcaaaaaaagaaagaaatgaggaaattatgaatactttatttgaa
caattacctattttggaacaaaccaaaaaagctttaagagaacttaattttatcgaagca
accccgatccaagccttagtgattccagaaattattcaaggacgtgacgtcattggacaa
gcccaaacaggaaccgggaaaacgtttgcttttggaatccccattattgaaaaaatcgat
cataaactagctaaaactcaaagtttaattttatgtccgactcgtgaattaactttacaa
gtatacgaagaattaaaaaaattgctccgtttttatccagaaattagaattgctgttgtc
tttgggggcgaatcttacactaaacaattcagagccttagaaaatagaccacatttaatc
attgctactcccggaagagcaattgatcatatagaaagaggcaaaattgatttatctgct
ttaaaaattttaactttagatgaagctgatgaaatgttaaaaatgggctttcaagaagct
ttagaaaccattttaaaacaaattcctgcagaaagacaaacagttttattttccgctact
ttaccgccttttatcaaaaaaatagctagtaaatatcaaaaagacactaaaattttaaaa
gttcctgttcaaaatattgctgttaacgcgattgaacaattttatttcttagtaaaggaa
gttgacaaaaataaattattagtccgcttattagatttaaaaaaagatcattctgctatt
ttatttgctaatactaaaaaagatgttgatgaaatcactgcttatttgcaagacaaaggc
tttttagcagatgctgtgcacggagatttaaaacaaaaccaaagacaatatgtgatgaat
aacttccgcaaaggcaaaattcaaattttaattgcaactgatgtggccgctagaggaata
gatatttctgatattaaaatggttattaactatgatttgcctcacgaagatgaagtttat
gtgcacagaatcggaagaactggacgcgctggcaaaaaaggtttagcttatagcttgatc
agccctagaaaaatgagtcaactaaaaaaattagaatattatttgaaagaaaaaattaat
ttgctagatatcccttctgtagatggcattaaaaaacaaattttaaaaaattttgaaaaa
aaaatcttagatatcgttgaaaaaaatactcaagaaagcattaattatcctattatcgaa
gaattattgcaaaaattttctgctgaacaaattattcaagggttattaacacatatttca
ccaaaagaaagaaattattctgatatttttccaccaagagtaagttttagcaataactct
tttgttcctagaagatttggagaaagtcgtttctacgaaccacgttttagtaattcccgc
tttcatgattctaaagcgagctcttatagtagaagtgattttgttgaagttgtaatcaat
cttggcaaaaaagacaacattaacccaccagcattaattaaactgttaaaagaagaattc
caaatttatagtaaaaatattggcaatattaagcatttaactcatgaaactatttttgaa
gtggcaagtcgttttttgtatcaattcaaaaataaatctaatgttcgtttccaaaacaaa
actgtaatcatcaataaaaaagattaa
DBGET
integrated database retrieval system
