Candidatus Phytoplasma solani: S284_05000
Help
Entry
S284_05000 CDS
T02881
Name
(GenBank) Zn-dependent hydrolase
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
psol
Candidatus Phytoplasma solani
Pathway
psol03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psol00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
S284_05000
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psol03019
]
S284_05000
Messenger RNA biogenesis [BR:
psol03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
S284_05000
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_C
RNase_J_b_CASP
Lactamase_B_2
TTHA0829-like_ACT
ASXH
RMMBL
Motif
Other DBs
NCBI-ProteinID:
CCP88437
UniProt:
A0A421NY87
LinkDB
All DBs
Position
550471..552156
Genome browser
AA seq
561 aa
AA seq
DB search
MNDINFFALGGLGENGKNFYLLQINESYFIIDAGLKYPNISLYGIDSMIADYYKLENIQD
QIKGIFLSSAFETNLGALPYLIKDLNLPIYTSYFTLQVLKAHFQSHKINYKDFNLNIVKV
DEVLHFEDVEVSFFATSQSIPETLGFSFRTQRGAIVYLGDLKSLETNSKFFQTNFNKLSQ
ITQQKVLALLPSSQEAFNNSYDHNENNFEHKINNYLINYSLNPKGIMVIASLMPDILKTQ
IALNLACRLNLKVAFLGYKKEKIIEVALKKAFLKIPPSNLVELNTFEEHRKHHQLVVFLF
GKHFDTLQRLQKMGKHVDRTIHLNSQDLVLLMSKEIAGISKMQSQTLDLLSRHNIKAHVV
VKDLSTYESNYEQNLKIILNLLKPNYIIPVMGEYRHQFQVKKIAQKIGFKSSQVFLLENG
SIWHCPACKEPFVEHKAMTLGEILIDGTPVIDGQNFIMKDRELLAADGVVIVVANVNAKY
KKIVGEPQIVSKGFLGQTETEHIFPKLKAVFDNKSAFFLQKKYIKWNDFKKHIRESLVKF
LFKETKKRPIIIPIFISVKNE
NT seq
1686 nt
NT seq
+upstream
nt +downstream
nt
gtgaatgacattaatttttttgctttaggtgggttaggtgaaaatggcaaaaatttttac
cttttacaaattaatgaatcttattttattattgatgcaggcttaaaataccctaatatt
tccttatatgggatagattcaatgatagctgattactataaattagaaaacattcaagat
caaattaaagggatatttttgtcctcagcttttgaaactaatttaggagctttaccttat
ttaatcaaagatttaaatttacccatttatacttcttatttcactttgcaagtgttaaaa
gctcatttccaaagtcataaaatcaattataaagattttaatttaaacattgttaaagtc
gatgaagtgcttcatttcgaagatgttgaagtatctttttttgccacttcacaatctatc
ccagaaaccttaggtttttcttttcgaactcaaaggggagccattgtataccttggcgat
ttaaaatcgttagaaacgaattctaaattttttcaaaccaattttaacaaactatcacaa
attactcaacaaaaagttttagctttactaccatcttcccaagaggcttttaataattct
tatgatcataatgaaaataattttgagcataaaatcaataattacctcattaattactct
ttaaacccaaaaggtattatggttattgcttctttaatgcctgatattttaaaaacacaa
atagcacttaatttagcttgtcgattaaacttaaaagtagcttttttaggatataaaaaa
gaaaaaattattgaagttgccttaaaaaaagcttttttaaaaattcctccttccaatttg
gttgaattaaacactttcgaagaacatcgcaaacatcatcaattagtagtttttcttttc
ggtaagcattttgacactttacaacgtttacaaaaaatgggaaaacacgttgatcgaaca
atacacttaaattctcaagatttagttttattgatgtcaaaagaaatagcaggaatttca
aagatgcaatctcaaactttagatcttttgtcgcgtcacaatattaaagctcatgtggtg
gtcaaagatttatcgacttatgaaagcaattacgaacaaaatttaaaaattattttaaat
ttattaaaacctaattatattattcctgtgatgggagaatatcgtcatcaatttcaagtt
aaaaaaatagctcaaaaaataggttttaagtcgtctcaagtctttttgttagaaaatggt
tccatttggcattgccccgcttgcaaagaaccttttgttgaacacaaagccatgactttg
ggcgaaattttaattgatggcactcctgttatagatggacaaaatttcattatgaaagac
cgcgaacttttagcagctgatggagttgtaattgtagttgctaacgttaacgctaaatat
aaaaaaattgtaggcgaacctcaaatagtgagcaaaggttttttaggacaaacagaaact
gagcatatctttcctaagttaaaagctgtctttgacaacaaaagtgctttttttctacaa
aaaaaatatatcaaatggaatgattttaaaaaacacattagagaatctttagtaaaattt
ttatttaaagaaactaaaaaaagaccgattataattcctatttttattagtgttaaaaac
gaataa
DBGET
integrated database retrieval system