Papaver somniferum (opium poppy): 113271759
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Entry
113271759 CDS
T05758
Name
(RefSeq) cleavage stimulation factor subunit 50-like
KO
K14406
cleavage stimulation factor subunit 1
Organism
psom
Papaver somniferum (opium poppy)
Pathway
psom03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
psom00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
113271759
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psom03019
]
113271759
Messenger RNA biogenesis [BR:
psom03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
113271759
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_WDR5
WD40
LisH_CTF50
Beta-prop_THOC3
Beta-prop_WDR3_1st
WD40_Prp19
Beta-prop_IFT122_1st
Beta-prop_WDR3_2nd
WD40_CDC20-Fz
Beta-prop_WDR36-Utp21_2nd
Beta-prop_EML_2
WD40_WDHD1_1st
WDR55
EIF3I
Beta-prop_TEP1_2nd
WD40_Gbeta
WD40_MABP1-WDR62_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_WDR36-Utp21_1st
Beta-prop_EML
ANAPC4_WD40
Beta-prop_EIPR1
Beta-prop_TEP1_C
Beta-prop_WDR90_POC16_2nd
NBCH_WD40
Beta-prop_Aladin
WDR90_beta-prop_4th
Beta-prop_WDR75_1st
Beta-prop_NOL10_N
Beta-prop_RIG_2nd
ASA1
WD40_MABP1-WDR62_1st
Cytochrom_D1
CFAP251_N
Beta-prop_NWD2_C
DSE1_N
Ge1_WD40
Beta-prop_SCAP
Beta-prop_DCAF4
PAC11
Beta-prop_WDR41
Beta-prop_IFT140_1st
Beta-prop_VPS8
Motif
Other DBs
NCBI-GeneID:
113271759
NCBI-ProteinID:
XP_026377452
LinkDB
All DBs
Position
4:160818589..160824257
Genome browser
AA seq
439 aa
AA seq
DB search
METSLEQILQDGKLLRQVNDLIVAHLRDNNLNQAAIAVASATMTPLNVESPPNKLIELVA
KGLAVERDEAFRGVAPAAALFDYGSAAIPAGYGLVPPPRITSVDFSAVQDTKGASKSFAK
HETRHVSEHKNVARCARFSPDGRYVATGSADTSIKLFEISKIKQMMLPDTRDGPVRPVIR
TFYDHLQPVNDLDFHPQSTILISGAKDHTIKFFDFSKTAAKRAYRVIQDTHNVRSVSFHP
SGEFLLAGTDHSIPHLYDINTFQCYLSANAPEIGGNGAINQVRYSSTGGTYVTASKDGAV
RIWDGVTAQCVRSMVGAHGSAEATSASFTKDQRFVLSCGKDSTVKLWEIGTGRLVKQYIG
ATHTQLRCQAVFNETEEFVLSIDEPSNEIVVWDALTAEKVARWPSNHTGAPRCLEHSPTE
SAFISCGTDRSVRFWKETL
NT seq
1320 nt
NT seq
+upstream
nt +downstream
nt
atggagacaagtttagaacagattttgcaagatgggaagttgcttcgccaggttaatgac
ttgatcgttgcacatcttcgcgacaacaacctcaatcaggctgccatagcagttgcttcg
gctacaatgacaccattgaatgtggaatcacctccaaacaagctaattgagcttgtcgca
aagggacttgcagtggaaagggatgaggcattcaggggagttgctcctgcagctgctctc
tttgattatggttcagcagctatacctgctggatatggattggtccccccacctcgtatt
acttctgttgatttcagtgctgtgcaggatacaaaaggggcttccaagagttttgcaaaa
cacgaaactagacatgtttcagagcataagaatgttgctagatgtgcaagatttagtcct
gatggacgatatgttgcaactggaagtgctgacacatcaattaagctatttgagatttca
aaaatcaagcaaatgatgttgccagatacaagagatggtccggtgcgacctgtaataagg
acattttatgatcatttacagccagtaaatgatttggatttccatcctcaatctactata
ttaatatcgggggccaaagatcacactataaagttcttcgatttctcaaaaacagcggcg
aagagagcttatcgagttattcaggatactcacaacgtgagatctgtatcttttcatcca
tcaggggaatttcttttagcagggacggatcattcaattccacatctgtatgacataaac
accttccagtgttacttatcagcaaatgcaccagaaattgggggtaatggcgcaatcaat
caggtcaggtattcatctacaggtggcacctatgtaacagcttctaaagatggtgctgtg
aggatttgggatggggtaaccgctcaatgtgtgcgttccatggttggggcacatgggtca
gctgaagccaccagtgcaagtttcaccaaggaccaaagatttgttctctcctgtggaaag
gactccacggtgaagctttgggagattggcacagggagactagtcaaacagtacattgga
gctacacatacgcaattgcgctgccaggctgttttcaatgaaacggaagagtttgtacta
tccattgatgaaccaagcaatgagattgttgtctgggacgctttaactgctgagaaagtt
gcaaggtggccgtctaaccacactggcgcaccacgctgtctggagcattcaccaactgag
tcagcctttatctcatgtgggactgacaggtcggtgcggttctggaaggaaacgctttag
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