Papaver somniferum (opium poppy): 113274564
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Entry
113274564 CDS
T05758
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 2-like
KO
K14402
cleavage and polyadenylation specificity factor subunit 2
Organism
psom
Papaver somniferum (opium poppy)
Pathway
psom03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
psom00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
113274564
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psom03019
]
113274564
Messenger RNA biogenesis [BR:
psom03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
113274564
U7-dependent histone pre-mRNA processing factors
113274564
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Lactamase_B_6
CPSF100_C
Beta-Casp
RMMBL
Lactamase_B
Lactamase_B_2
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-GeneID:
113274564
NCBI-ProteinID:
XP_026379727
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Position
4:complement(2119235..2126474)
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AA seq
740 aa
AA seq
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MGTSVQVTPLSGVYNENPLSYLVSIDGFNILIDCGWNDAFDTSLLKPLSSVASTVDAVLL
SHSDTLHLGALPYAKQHLGLTAQVYSTDPVHRLGLLTMYDHYYSQKQVSDFDLFSLDDID
FAFQSIETLKYSQNHHLTGKGEGIVIAPHVAGHLLGGTVWKITKDGEDIIYAVDFNHRKE
SHLNGTVLETFVRPAVLITDAYNALNSQDPRTKIEKGFLGKIKNTLEGGGNILLPVDTAG
RVLELLLVMEQYWAQNHLPYPIYFLTYVSSSTIEYAKSFLEWMSDTIAKSFEDTRDNAFL
LKHVTLMINKSELDKVPEGPKIVLASMASLEVGSSHDIFAEWATDVKNLVLFTERGQFGT
LARMLQADPPPRAVKVTMRNRVPLVGEELVSFEEEQNRIKKEEALKASVSKEEDIKASNG
SDVKEDDPMVIDASNAPASSEVTVPHGGAHRDIFIDGFIPSSTSVAPMFPFYENSSEWDD
FGEIINPDDYVVKEEDMDLMSMHVGGDLDGKLDEVAANLILDSRPSKIVSNELTVQVKCS
LVYMDFEGRSDGRSIKSILSHVAPLKLVLVHGSAEATEHLKQHCLKNVCPHVYAPQVGET
IDVTSDLCAYKVQLSEKLMSKVLFKKLGDHEVAWIDSGVERTETEMLSLRPISTAPPPHK
SVFVGDLKLADFKQFLASKGVQVEFSGGALRCGEYVTLRKVGDATQKGGTGGTQQVIIEG
PLTEEYYQIRDYLYSQFYLL
NT seq
2223 nt
NT seq
+upstream
nt +downstream
nt
atgggaacatcggttcaagtaacaccactaagtggtgtttataacgaaaaccctctatct
tacctggtttcaatcgatggttttaacatcttaatcgattgtggttggaatgatgctttc
gatacctctcttcttaaacccctttccagtgtagcttccacagtagatgctgttctgttg
tcacattcagacacactacatctcggtgctttgccatatgccaagcagcatcttggactc
actgctcaagtttattcaactgatcctgttcatagattaggacttttgacaatgtacgat
cactattattcacaaaagcaagtttcggattttgacttgttttcgctggatgacattgat
ttcgcttttcaaagcatcgagacactaaaatattctcagaatcatcacctgactggtaaa
ggagaaggaattgttattgctcctcatgtagcggggcatctattgggcggtactgtatgg
aaaataacaaaagatggggaggatataatatacgccgtagacttcaatcatcgtaaagaa
agtcacttgaatggaactgtcttagagacatttgtgcggcctgccgttctgataaccgat
gcttacaatgctttgaacagtcaggatcctagaaccaaaattgagaaaggtttcttaggt
aaaattaagaataccctagaaggaggtggaaatatactgcttcctgttgatacagcaggg
cgggttttggaacttcttttggttatggaacagtattgggcacagaatcatctgccttac
cctatttattttcttacatatgtttcttcgagtacaattgagtatgcaaagagcttcctt
gagtggatgagtgacacaattgcgaagtcttttgaagacacacgtgacaatgcttttctt
ttgaagcatgttaccctaatgatcaacaagagtgagctggacaaagtaccagaaggccca
aaaattgttttagcttcaatggccagcctggaagtgggatcttctcatgatatatttgct
gaatgggcaactgatgtgaagaatcttgttctatttacagagagagggcagttcggaaca
ttagctcgaatgcttcaggcagatccacctcctagagctgtaaaggtcactatgcgcaat
agggttccactggtaggggaagagttagtatcttttgaagaagagcaaaaccgaataaag
aaggaagaagcattaaaagctagtgtaagcaaagaggaagatattaaagcatctaatgga
tctgatgtaaaagaagatgatccaatggtcattgatgcatctaatgctcctgcatcatct
gaggtgactgtaccacatggaggcgctcatcgagacatcttcattgatggattcattcct
tcttctacaagtgtagctccaatgtttcctttttatgaaaactcttctgaatgggatgat
tttggtgagatcattaaccccgatgactatgtagtcaaggaagaggacatggatcttatg
tcaatgcatgttgggggagatctggatggcaaacttgatgaagtagctgctaacttgata
cttgattcaagaccttcaaaaattgtttcaaatgaattgacggtgcaagtgaagtgctca
ttggtttacatggacttcgagggtcgttcagatggccggtctatcaaatcaattctttcc
cacgtggctcctctaaaacttgttttggtgcatggatcagcagaggctactgagcattta
aagcagcactgcttgaagaatgtgtgtccccacgtctatgctccccaggttggagaaaca
attgacgtcacctcggatttgtgtgcttacaaggtgcaactttctgagaaactgatgagt
aaagtactattcaagaagcttggagaccacgaggtagcttggattgattctggggtagag
aggaccgaaacagaaatgctgtctctacgtcctatctcaactgcacctccgcctcataaa
tctgtttttgttggtgacttaaaactagcagatttcaagcagttccttgcaagcaaagga
gtccaggttgagttctctgggggtgctttgcgatgtggggagtatgttacactgcgcaag
gttggagatgcaacccaaaagggtggtacaggcggtactcagcaagtgattatcgaaggt
cctttaactgaagaatattaccaaattcgtgattatctctattcacagttctatttacta
taa
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