Papaver somniferum (opium poppy): 113274750
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Entry
113274750 CDS
T05758
Name
(RefSeq) general transcription and DNA repair factor IIH helicase subunit XPB1
KO
K10843
DNA excision repair protein ERCC-3 [EC:
5.6.2.4
]
Organism
psom
Papaver somniferum (opium poppy)
Pathway
psom03022
Basal transcription factors
psom03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
psom00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
113274750
09124 Replication and repair
03420 Nucleotide excision repair
113274750
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
psom03021
]
113274750
03400 DNA repair and recombination proteins [BR:
psom03400
]
113274750
Enzymes [BR:
psom01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
113274750
Transcription machinery [BR:
psom03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
113274750
DNA repair and recombination proteins [BR:
psom03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
113274750
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ERCC3_RAD25_C
Helicase_C_3
ResIII
Helicase_C
SNF2-rel_dom
DEAD
SWI2_SNF2
Motif
Other DBs
NCBI-GeneID:
113274750
NCBI-ProteinID:
XP_026379921
LinkDB
All DBs
Position
4:complement(12508837..12514577)
Genome browser
AA seq
666 aa
AA seq
DB search
MHEYNLTPHSLYAAVSVGLETETIISVLNKLSKTKLPKEMIDFIYASTSNYGKVKLVLKK
NRYFVESPFPEVLKTLLRDEVIYRARLSSEGSAGTDSFTISKAIGEVEGTHDELLNGIEL
AAAEEKETHAFEVDPAQVENVKQRCLPNALNYPMLEEYDFRNDTVNADLNMELKPQAQPR
PYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIRKSCLCLATNAVSVDQWAFQ
FSLWSTIREDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWG
LLLMDEAHVVPAHMFRKVISITKSHCKLGLTATLVREDDRITDLNFLIGPKLYEANWLDL
VKGGFIANVQCAEVWCPMTKEFFAEYLRKENSKKKQALYVMNPNKFRACEFLIRFHEQQR
GDKIIVFADNLFALTEYAMKLRKPMIYGATSHQERTRILHAFKNSPDVNTVFLSKVGDNS
IDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKHQDRMAGGKEEYNAFFYSLVSTDTQ
EMYYSTKRQQFLIDQGYSFKIITSLPPADSGSDLSYHTRDDQLQLLGKVLNAGDDMVGLE
QLDEDTDDIALIKARRTMRSMSHMSGADGMAYMEFTKGKYPGQGHLKSIKPKDPTKRHSL
FKKRFG
NT seq
2001 nt
NT seq
+upstream
nt +downstream
nt
atgcatgagtataatttgacaccacattcgttatatgctgcggtatcagttggccttgag
actgaaactatcattagtgtgctgaataaattgtcgaaaacgaagttaccaaaagaaatg
attgattttatatatgcttctacttctaattatgggaaagtgaagcttgtgcttaagaag
aatcggtatttcgttgaatctccgtttccagaggtgttgaagacgttgctgcgggatgag
gtcatttatagagcaaggctttcttctgagggttcagctgggactgattctttcacgatt
agcaaagccataggagaggtagaaggtactcatgatgagttgctgaatggaattgaattg
gcagcagctgaagaaaaagaaacacatgcctttgaagtcgatcctgcccaggtggaaaat
gtgaagcaacgttgtttgccgaatgctttaaattaccctatgttggaggagtatgacttc
agaaacgatacggttaacgctgacctgaacatggaactaaagcctcaagcacaaccacga
ccttatcaggaaaagagtcttagtaaaatgtttggaaatggtagagcaagatcaggcatt
attgttctcccttgtggagcaggaaagtcgttagttggagtttccgcagcttgccgaata
cgcaagagttgcctttgtcttgcaacaaatgctgtttctgtggatcagtgggcatttcag
ttcagcttgtggtctactattagagaagatcaaatatgtcgattcacgtctgatagtaag
gaaagattccgtggtaacgctggggttgttgtgaccacatataacatggtggcatttggt
ggtaagcgatccgaagaatctgagaaaattattgaagagataaggaatagagagtgggga
ttacttcttatggacgaggcgcatgtggttcctgcgcatatgtttcgtaaagtcatcagt
ataacaaaatcacattgcaagcttggacttactgcaacactagtgagagaagatgaccgt
attacggatttaaattttcttattggtccaaaattgtatgaagccaactggttggacttg
gtaaaaggagggtttattgcgaatgtccagtgcgctgaagtatggtgcccgatgacaaag
gagttctttgctgagtatttgagaaaagaaaattccaagaaaaaacaggctctgtatgtg
atgaatccaaacaaattccgggcgtgtgagttcctgattcggtttcacgaacagcagcgt
ggtgataagattattgtttttgctgataatctttttgcgcttaccgagtatgccatgaag
cttcggaaacctatgatttatggtgccaccagccaccaggagagaacaagaattcttcat
gcttttaaaaacagtccagatgttaatactgttttcctttcgaaggttggtgataactca
atagatatccctgaggccaatgtgattatccagatctcatctcatgccggttcccgacgt
caggaagcccaacgtttgggtcgtattctgagagcaaagggtaaacatcaagatcgaatg
gctggaggcaaggaggagtacaatgcctttttctattccctagtatctactgatacacag
gagatgtactattctactaagaggcaacagtttttgatcgatcaaggttacagctttaag
atcatcacaagtttaccaccagcagattccggatcagatctaagctatcacacccgcgac
gatcaactacaacttctcggcaaggtactaaatgcaggtgatgatatggttggtttggag
caattagatgaggataccgatgatattgcacttataaaagcacgtcgcactatgagatct
atgagtcacatgtctggtgctgatggcatggcttacatggaattcaccaaggggaagtat
cctggacaggggcatcttaaaagtattaagcctaaggacccgacaaagcgacacagcttg
ttcaaaaagcgatttggttga
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