Papaver somniferum (opium poppy): 113274925
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Entry
113274925 CDS
T05758
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 8-like
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
psom
Papaver somniferum (opium poppy)
Pathway
psom03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psom00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
113274925
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psom03019
]
113274925
03036 Chromosome and associated proteins [BR:
psom03036
]
113274925
Enzymes [BR:
psom01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
113274925
Messenger RNA biogenesis [BR:
psom03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
113274925
mRNA degradation factors
5'-3' decay
Decapping complex
113274925
Chromosome and associated proteins [BR:
psom03036
]
Eukaryotic type
Gene silencing
piRNA pathway
113274925
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
NA-iREase2
TFIIA
Motif
Other DBs
NCBI-GeneID:
113274925
NCBI-ProteinID:
XP_026380125
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All DBs
Position
4:22301342..22307408
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AA seq
495 aa
AA seq
DB search
MNNPRGRYPPGIGNGRGGGGGGGYVNSNPNFQPRNPQQQQYVQRNPVQNQPQYQQQQQQQ
QQQQWLRRNPMGGNESSVNEVEKAVQSETIDSSSQDWKARLKIPPSDTRYRTEDVTATKG
NEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPAL
EKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDIMRLYQPV
HLLVGTPGRILDLAKKGVCVLKDCSMIVMDEADKLLSPEFQPSVEQLIRFLPTSRQILLF
SATFPVTVKDFKDRYLQKPYIINLMDELTLKGITQFYAFVEERQKVHCLNTLFSKLQINQ
SIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTR
GIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTE
IKQIPPQIDQAIYCR
NT seq
1488 nt
NT seq
+upstream
nt +downstream
nt
atgaataatccaagaggtaggtatccgcctgggattgggaatggtcgtggtggtggaggg
ggtggtgggtatgtgaattcaaaccctaattttcaaccaagaaaccctcaacaacaacaa
tatgtgcagaggaatcctgtacagaatcaacctcagtatcagcaacaacagcaacagcaa
caacaacaacagtggttgagaagaaatcctatgggcgggaatgaatcaagtgtgaatgaa
gtcgagaaagcagtgcagtccgaaaccatcgattcgagttctcaagattggaaggcaagg
ctaaagatcccacctagtgatacacgttataggacagaggatgtgacggctacaaaagga
aatgagtttgaagattactttttgaagcgtgagctgctgatggggatatacgagaagggt
tttgaaagaccttctcccatccaggaagaaagcattccaattgctttgaccggaagcgat
attcttgccagagctaaaaatgggacaggaaagacagctgctttctgcattcctgctctg
gaaaaaatagatcaagacaacaatgtgattcaagttgttatactagttcctactagagaa
ttggcgctccagacatcacaagtctgtaaggagctcgggaagcatctgaagattcaagtc
atggtgaccactggaggaaccagtctaaaggatgacatcatgcgcttataccaacccgtg
catttgctcgttggaacacccggaaggattcttgaccttgccaagaagggtgtttgtgta
ctgaaagattgctcaatgattgttatggatgaggcagataagcttttgtctccagagttt
caaccttcagtcgagcagttaattcgttttctacctacaagtcgacaaatcttgttgttt
tcagcaacatttcctgtaactgttaaggattttaaagatagatatctacaaaagccgtac
atcattaatcttatggacgagcttaccctcaagggaataacacaattttatgcttttgtg
gaagagaggcagaaggtccactgcttgaacactctcttctcgaagcttcaaattaaccag
tcaatcatattttgcaactctgttaatcgggtagagctgttagcgaaaaaaattacagag
ctcggctattcttgcttctatattcatgcgaaaatgttgcaagatcaccgaaacagagtg
tttcacgattttcgcaatggtgcctgtaggaatcttgtttgtacggatttattcacaagg
ggtattgacattcaagcagttaacgttgttataaacttcgatttccccaagaactccgaa
acttatcttcacagggttggtcgatctggaaggtttggacatcttggtttggctgtgaat
ttgatcacatatgaggaccgcttcaacttgtataggattgaacaagaacttgggacggaa
attaaacaaattcctccgcaaatagaccaagctatatactgtaggtga
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