Papaver somniferum (opium poppy): 113275132
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Entry
113275132 CDS
T05758
Name
(RefSeq) ATP-dependent DNA helicase 2 subunit KU80-like
KO
K10885
ATP-dependent DNA helicase 2 subunit 2
Organism
psom
Papaver somniferum (opium poppy)
Pathway
psom03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
psom00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
113275132
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
psom03400
]
113275132
DNA repair and recombination proteins [BR:
psom03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA-PK complex
113275132
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
Ku
Ku_PK_bind
Ku_N
Ku_C
DUF4962
NKWYS
Motif
Other DBs
NCBI-GeneID:
113275132
NCBI-ProteinID:
XP_026380361
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Position
4:34946077..34951227
Genome browser
AA seq
691 aa
AA seq
DB search
MARNKEALILLIDVGPSMHKLLPEVEKICSMLVQKKLIFGKYDEVGVVLFATDDTDNELT
TEVGGYEHVVVLRNCKVVDGDIIEALQSLPRGAAPGDFLDAIVVGMDMMIKKFGQTSKGK
KRLCLITDAKSPIKDPYEGTKEDQVDTIAAQMNAHGMKLESIIVRGRSSGDAAKGFMEEN
DSLLVHFSKKASAKTVYVESPTSLLGAIRTRNISAVTTFRGDLELSPKMKVKVWVYKKTA
EEKFPTLKKYSDKAPPTDKFATHEIKVDYEYKGVEDPTKVIPPEQRIKGYRYGPQVVPIS
SDEWDAVKFKPEKSVKLLGFTDASNIMRHYYMKDVSIFIAEPGNAKATVAVSALVRAMAE
MNKVAILRCVWRQGQASVVVGALTPNPSNVENIPDSFYFNVLPFAEDVREFQFPSFSNLP
LSMQPNEKQQEAADNLVMMLDLAPPGKEEILRPEFTPNPVLERFYRVLEIKSKKPDAEVP
PLDTTLKRITEPDPELLSQNMQVIDVFSKQFELKENPKIKKSARRLLNEKPSGSHKDELD
GVVDAVGHQAVLSLKNKSSQMVDKVGSETPIEDFEAMMTRKGRADWVDKAIKDMKNLIFD
LVENSYEGNTYQKAVDCLVALRKGCILEQEPKQFNDFLRHLCKFCSEKYLSSFCNFLASK
QMRLISDTESSDSDVTDEEAGSFLVKTEPGV
NT seq
2076 nt
NT seq
+upstream
nt +downstream
nt
atggcgcgtaataaggaagcattgattttattgattgatgttggtccatctatgcacaaa
cttcttccagaggttgaaaaaatctgctctatgcttgtacagaaaaagctaattttcggc
aagtacgatgaagtgggtgttgttctgtttgcaactgatgatactgataatgagctgaca
actgaagtgggcggttatgaacatgtggtggtattacgaaattgtaaagttgttgatgga
gatataatagaagcgttacaaagtttgcccaggggagcagctcctggtgattttcttgat
gccattgtggtgggtatggatatgatgataaagaaatttggtcaaaccagcaaaggaaag
aagcgcctttgtcttataacagatgcgaaatctcccattaaagatccatatgaaggaaca
aaagaggatcaagtcgacaccattgctgcacaaatgaatgctcatggcatgaaactggaa
tcaattatcgtgcggggaagatcaagtggggatgcggctaagggcttcatggaggagaat
gattctctattagttcatttctcaaaaaaagctagtgcaaaaacagtttatgttgaaagc
ccgacttcattgttaggtgcaattagaacaagaaacatatctgcagtcacaacattcaga
ggagaccttgagctgagcccaaaaatgaaggttaaggtgtgggtatacaagaaaacagcc
gaagagaagtttcctactctgaaaaagtactctgataaagcacctcctacagataagttt
gctactcatgaaatcaaggtagattatgagtacaaaggagttgaagatcctactaaagtc
atacccccagaacaaaggatcaaaggttatcgttatggacctcaagtggttcctatttca
tctgacgaatgggatgctgtcaagttcaaaccagaaaagagcgtgaaacttttagggttt
accgatgcttccaacattatgcggcactattatatgaaggatgtttccatcttcattgct
gaacctggcaacgcgaaggccactgttgcagtttctgccttggtaagagcaatggcggaa
atgaataaagtcgcaattctccgttgtgtatggagacaaggtcaggcgagcgtagtcgtt
ggggctttaacacccaacccttcaaacgtagaaaatatcccagactcgttttacttcaat
gtgcttccattcgctgaagatgttcgagagtttcagtttccatcgtttagcaacttgcct
ttgtcaatgcagccgaatgagaagcaacaagaagcagcagacaatttggttatgatgctt
gaccttgcacccccaggcaaagaagaaattctgcggcctgaatttacacctaatcctgtc
cttgagcgtttttatcgtgtgctcgagataaaatcaaagaaaccagatgctgaagtgcct
ccacttgacacaacactaaaacggataactgaacctgatccagaacttctttctcaaaac
atgcaagtcatagatgtattttccaagcagttcgagctgaaggagaatccaaagattaag
aagtctgccagacgattattgaatgaaaagccctcaggttcacataaagatgaactggac
ggtgtggtagatgccgttggtcatcaagcagtcctttctcttaaaaacaaatcatcacaa
atggttgacaaagttgggagtgagactccaattgaagattttgaggccatgatgacacgt
aaaggtcgtgcagactgggtcgataaagccatcaaagacatgaaaaatctaatatttgac
ctggtagagaactcctatgaagggaatacctatcagaaggcagtggactgtctggttgca
cttcgcaagggatgcattcttgagcaggagcctaagcagttcaatgattttctgcgccat
ctttgcaagttttgctcggagaaatacctctcgtccttctgcaacttccttgcctccaaa
cagatgaggttgataagcgacacagaatcttcagacagtgacgtaacagatgaagaggcc
ggaagtttcttggtcaaaactgaaccgggtgtttag
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