Papaver somniferum (opium poppy): 113275160
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Entry
113275160 CDS
T05758
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH7-like
KO
K12815
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 [EC:
5.6.2.6
]
Organism
psom
Papaver somniferum (opium poppy)
Pathway
psom03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
psom00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
113275160
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
psom03041
]
113275160
Enzymes [BR:
psom01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
113275160
Spliceosome [BR:
psom03041
]
Complex C
Other components
Step II factors
113275160
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
HA2_N
AAA_22
AAA_30
AAA_19
nSTAND3
T2SSE
AAA_23
SLFN-g3_helicase
AAA_24
ATPase
ABC_tran
Flavi_DEAD
PhoH
AAA_29
Motif
Other DBs
NCBI-GeneID:
113275160
NCBI-ProteinID:
XP_026380383
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All DBs
Position
4:complement(37370633..37376510)
Genome browser
AA seq
1263 aa
AA seq
DB search
MEGDYHGDINTYTKAVTLLESEVSSGGLCVAGKDKVVSRNPERKSLLGLDALANAKRELK
SVFRVPKDKPVSAVASVDEDENSMLSEVDNLETDLLHVRPSKRCYRRNATVDSSRSESCL
TSEGRSRATELCSLSGGSYRSVQSHTPFKYGRDGRHRERRDYRDDTRSESRSVRQRHSVR
ETPDRFRDQRYHEDSRSKYEYSSRRAHGSDWDDGRWEWEDTPRRDNHSTPSRSHRPSPAP
MLVDFSPDGRLVSPWLGGTPYAGILQGLVLSPWDCVSPSPVPIRASGTSSVRYSSSRPGG
RSHQLKSSAGKYEGNGADERSSSMSHEITEKLRLQMEYDADRAWYDRDEGNTSFDGDSSS
GFLGDEASFEKKKAEVVKKLVRKDGTLMTLAQSKKLSQMNADYAQWEDRQLLRSGAVRGT
IVQTEFEDEDERRVILLIHDTKPLFLDGRVVFTKQADPIVPLKDPSSDMAMISRKGSALV
KEIHEKQSQNKSRQRFWELAGSKLGDILGVEKTAEQVDADTAVVGDEGEIDFKEDAKFAQ
HMQQKGEAVSDFAKSKTLMQQRQYLPIYSQRDELMQVIRENQVIIIVGETGSGKTTQLTQ
YLYEDGYATNGIVGCTQPRRVAAMSVAKRVSEEMETELGDKVGYAIRFEDVTGPNTKIKY
MTDGVLLRETLKDSDLARYSVVVMDEAHERSLNTDVLFGILKKVVAQRRDFKLIVTSATL
DAQKFSNFFGGAPLFEIKGRTFDVDIFHSKCPCEDYVEGAVKQAMSIHITCPPGDILIFM
TGQEEIEATCFSLQERMDELASTTKKGVPKLLILPIYSQLPADLQAKIFQKAEDGARKCI
VATNIAETSLTVDGILYVIDSGYSKMKVYNPRMGMDALQVFPVSQAAAKQRAGRAGRTGL
GQCYRLYTKSAFEKQMLPSPVPEIQRTNLGNVVLLLKSLKIENLLDFDFMDPPPQDNILN
SLYQLWILGALNNVGSLTELGWMMVEFPLDPPLAKMLLIGGQLGCLNEVLIIVSMLSVSN
VFFRPKERAEESDAAREKFFVPESDHLTLLNVYQQWKANQYRGDWCNDHYLHVKILRKAR
EVRSQLLDILKTLKIPLTTCGLDWDVVRKAICSSYFHNAARLKGIGEYVNCRNGMPCYLP
QNSALYGLGYSPDYVVYHELILTTKEYMQCATAVEPQWLAEMGPMFFSVKDSDTSMLDHK
KKQKDTKTAMEEEMENLRKEQAEMEKVNQEKEKQKRAKQQQQILMPGYTKCSSTHLKPKK
FGM
NT seq
3792 nt
NT seq
+upstream
nt +downstream
nt
atggagggagattatcatggggatattaatacgtacacaaaggcggtaactttgttggaa
tctgaagttagcagtggagggttgtgtgttgctggaaaggataaggtggtttctagaaat
ccagagaggaaatctcttctaggtttggatgcgcttgctaatgcaaaacgagaattgaaa
agtgtgttcagagttcctaaagataagcctgtttcagctgtggcttctgttgatgaagat
gagaattctatgttgtctgaagtggataacctagaaaccgacttacttcatgttagacca
tctaagcgatgttatcggcgaaacgcgacagtagattcttcacgatcagaaagttgttta
acaagcgaaggacgttctcgagcaactgaattgtgtagtctatctggtggaagctatcga
agtgttcagtctcatactcctttcaagtatggcagagatggccgtcaccgtgaacgaaga
gattacagggatgatactaggtcagagagtagaagtgtcaggcaaagacacagtgttaga
gaaacgcctgatcgattcagggatcagagataccatgaagactctcggagtaaatacgaa
tattcttctagaagggcacatggatctgattgggatgatggaagatgggaatgggaagac
accccacgtagggataatcattctacacctagtaggagccaccggccttcaccagcccca
atgctagttgatttttcacctgatggtcgtctggtgtccccatggctgggaggtacacct
tatgcaggtattcttcagggtctggtgctctctccctgggactgtgtatcaccatctccc
gtcccaatacgtgcttcggggacatcctcagtgagatactcaagttctcgtcctggtgga
agatcacatcaacttaaatcttccgccggaaaatatgagggtaatggtgcagatgaacgt
tcttctagcatgagtcatgagatcacagagaagttgcgtttacagatggagtacgatgct
gaccgagcatggtacgatagagacgagggtaacacatcatttgacggtgatagctcatca
ggttttctgggggatgaggcttctttcgaaaagaaaaaggcagaggtggtgaagaaactg
gttcgcaaggatggaaccttgatgacacttgcacagagcaaaaagttatctcagatgaat
gctgattatgcacaatgggaagaccgccagcttctgagatcaggagctgttagaggaact
atagtgcaaacagaatttgaagatgaggatgaacgcagagtgattctccttattcacgat
acaaagcctcttttcctggatggaagagttgtctttacgaaacaagcagatcctatagtg
cccttgaaggaccctagttcagatatggcaatgatatcacgcaaaggatctgctctagta
aaagaaatccatgagaaacagagtcagaataaatcccgtcaaaggttttgggaacttgcg
ggatcgaagcttggtgatatcctgggtgttgaaaagacagcggagcaggtcgatgcagat
actgctgtagttggggatgagggagaaatcgacttcaaagaggatgctaagttcgctcag
cacatgcagcagaagggtgaagctgtaagtgactttgcgaagtcaaagactttaatgcag
caacgccaatatctgccgatatactctcagcgtgatgagttgatgcaggtaattcgtgaa
aatcaggtgatcatcatcgtgggagaaactggttcaggaaaaacgactcaacttacacag
tatctgtacgaagacggatatgctacaaacgggattgtcggttgcacacaaccaaggcgt
gttgcagcaatgagtgttgcaaagagagtcagtgaagagatggagactgagcttggtgat
aaagttggttatgctattaggtttgaggacgtgactggtccaaatacaaagataaagtac
atgacagatggagtacttcttcgtgagacactaaaagattccgacctcgctagatacagt
gtcgtagtcatggatgaagcacatgaaagatctctaaatacggatgtgctgtttggaatt
ttgaaaaaagttgttgctcagcgtcgtgactttaagctcattgtgacatctgcaaccctg
gacgctcagaaattctccaacttttttggaggtgctccactcttcgaaatcaaggggagg
acgtttgacgttgatatctttcatagtaagtgtccttgcgaagactatgtcgaaggtgcc
gtgaagcaggccatgtccattcatatcacgtgccctcctggtgatatcttaatttttatg
actggtcaagaagagattgaagcaacttgcttttccctacaagagcgtatggatgaactt
gcttccaccaccaagaaaggggttcctaaactgttgatactcccgatatactcccaactt
ccagctgatctgcaagccaaaatctttcaaaaagctgaagatggggcgcggaaatgtatc
gttgcaactaatattgctgagacgtcactgacggtggatggtatcctatatgtgattgac
agtggttatagtaagatgaaagtgtacaatcctaggatgggtatggatgcactccaagtg
tttccagtcagccaagctgctgctaaacaacgtgcaggtcgtgcagggagaacaggtcta
ggtcaatgctacaggctttacactaagtctgcttttgagaaacaaatgcttccgagtcct
gtacctgagattcaaaggactaatcttggtaatgttgttctattgctgaaatcactgaag
attgagaacctgctggattttgacttcatggacccgccacctcaagataatatcctcaac
tcgttgtaccaattgtggatactgggtgccttgaataacgttgggagtctgacagagctg
gggtggatgatggtggagtttccgttggatccaccacttgcaaaaatgcttctaattgga
ggacaacttggatgcttaaacgaggtgttgataattgtgtccatgttatcagtgagcaat
gtattctttaggccaaaagagcgtgctgaggaaagtgatgcagccagggagaagtttttt
gtgccagagtctgatcacctaacgttgctcaatgtataccagcagtggaaagcaaatcaa
taccgtggtgactggtgtaacgaccattatttgcatgtgaaaatattaagaaaggccaga
gaggtgaggtcacagttactagacattctaaagaccttgaagatcccactaaccacttgt
ggtctggattgggatgtcgtacgcaaggctatatgctcttcctacttccacaatgctgcc
agactaaaggggatcggtgagtatgtgaactgccgcaatgggatgccgtgttaccttcct
cagaacagtgctctgtatggattgggctactctccagattatgtggtgtatcatgaattg
atcttaactaccaaggagtatatgcaatgtgctacggcagtggagccacagtggttggcg
gagatgggtccaatgtttttttcagtcaaggattcagatacttcgatgttggatcacaag
aagaagcaaaaagacacaaagactgccatggaggaagagatggagaatttgaggaaggag
caagcagaaatggagaaggtaaaccaggaaaaagagaagcagaagagggcaaagcagcag
caacagattttgatgcctggatataccaaatgttcttccactcatctaaaaccaaaaaag
tttggaatgtaa
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