Papaver somniferum (opium poppy): 113276470
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Entry
113276470 CDS
T05758
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 14-like isoform X1
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
psom
Papaver somniferum (opium poppy)
Pathway
psom03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
psom00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
113276470
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
psom03041
]
113276470
03009 Ribosome biogenesis [BR:
psom03009
]
113276470
Enzymes [BR:
psom01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
113276470
Spliceosome [BR:
psom03041
]
Complex A
U1 snRNP components
U1 related factors
113276470
Complex B
113276470
Ribosome biogenesis [BR:
psom03009
]
Eukaryotic type
Pre-60S particles
Helicases
113276470
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
WW
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
113276470
NCBI-ProteinID:
XP_026381854
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All DBs
Position
4:120859892..120864259
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AA seq
661 aa
AA seq
DB search
MAATVSSAPSGPRYAPEDPTLPKPWKGLVDGNTGYLYFWNPVTNTTQYERPIAASSPAAP
PPKLAAVPMSSSVQVNQSSSQGQNRTGREENGRYNSEINAVDKLQYQTRNGSGNADTGPN
GVAAKVGSGPTPTPEAYRRQHEISVSGDDVPAPFSSFESTGFPPELLREVHQAGFSAPTP
IQAQSWPIALQSRDIVAIAKTGSGKTLGYLIPGFMHLKRVRNNSQMGPTVLVLSPTRELA
TQIQDEAVKFGRSLRLQCTCLYGGAPKGPQLREIERGCDIVVATPGRLNDILEMRKISLR
QVSYLVLDEADRMLDMGFEPQIRKIVNEIPPRRQTLMYTATWPKEVRKIAADLLVKPVQV
NIGNTDELAANKSITQHVEMVQPMEKQRRLEQILRSQEPGSKIIIFCSTKKMCDQLTRNI
TRNYGAAAIHGDKSQGERDYVLSQFRSGKAPILVATDVAARGLDVKDIRVVVNYDFPTGV
EDYVHRIGRTGRAGATGLAYTFFSENDAKHASDLVKLLEGANQRVPPQIRELASRGGGFN
RFKRWGPSSGGSDGARGGRFESSFGGRGRGPSSFSDRSEKEYGGRGFDREQPRESSGFDG
VSFHERAYGARNSDRRPRSPNKGGSGWGTTSRSRSRSPNRFEGGYNKQKEEVEEGLIGAD
D
NT seq
1986 nt
NT seq
+upstream
nt +downstream
nt
atggctgcaacagtatcatctgcaccgagtggaccacgttacgcaccagaagatccaaca
ctacctaagccatggaaaggattagttgatggaaacactgggtatttgtatttttggaat
ccggtgactaatactactcagtatgagaggcctattgctgcttcttcgcctgcggctcct
ccaccaaaacttgcagcagtgcctatgagttcttctgttcaagttaatcaatcatcgtct
caagggcaaaataggactggcagagaagaaaatggtcggtataatagtgaaatcaatgct
gtggataagctacagtatcagacaagaaatggaagtggaaacgcagatactggcccaaat
ggagtggctgccaaagtagggagtggtccaactccaacaccagaggcctatcgccgccag
catgaaatttctgtttctggggatgatgtaccagcgccgttttcatcatttgaatccaca
ggctttcctccagaacttcttagagaggtacaccaagctgggttctctgctccaactcca
attcaggcccagtcatggcctattgctctccaaagtcgtgatattgttgccattgcaaaa
acaggctcaggaaaaactttgggttacttaattcctgggtttatgcatctcaagcgagtg
cggaataactctcagatgggtccaaccgtattagtgctttctccaacaagggaattagca
acacaaatacaagacgaggctgtgaagtttgggaggtctttaagactccaatgcacgtgt
ttgtatggtggagccccaaaaggtccccagcttagagagattgaacgcggatgtgatata
gttgttgccactcctggacgcctgaatgatattttggagatgagaaaaattagcctccgt
caggtttcctaccttgtgcttgatgaggcagacaggatgttggacatgggttttgagcct
cagattcggaaaattgtgaatgagatacctcctcgccgacagacgctgatgtacactgca
acctggcccaaggaagtgcgtaaaattgctgccgatttactagttaagcctgtccaggtt
aacattgggaatactgatgagcttgctgcaaacaagtccattactcagcatgttgaaatg
gtccagccaatggaaaaacagaggcgactggaacagatattgcgatcacaggaaccaggt
tctaagattataatcttctgctcaaccaagaagatgtgtgaccagcttactcgcaatatc
acccgtaactatggggcagcagccattcatggggataaatctcagggtgagagggattat
gtgctaagccagtttcgctccgggaaagcgcctattcttgttgcgactgatgttgcagct
cgaggtctggatgttaaggacatcagggttgtggtcaactatgacttccctactggggtt
gaagattacgtccataggattgggagaactggaagagcaggtgcaacgggcctggcttac
acctttttttcagaaaatgatgcaaaacatgcatctgacctagttaagctcctagaaggg
gcaaatcagcgagtgccaccacagatccgtgagttggcatcccggggtggtgggttcaac
aggtttaaacgatggggtccttcctctggaggtagtgatggtgctcgtggtggacgtttt
gagtccagttttggaggcagaggtcgtgggccttcatcattttcagacagatcagagaaa
gagtatggaggtcgtggatttgatcgagaacagcctcgtgaaagttctgggtttgacggt
gtgagctttcatgaaagagcctatggtgcccgtaatagtgaccgtcgtcctcgaagccca
aacaaagggggaagtggatggggcacaacaagcaggagccgcagccgcagccctaataga
tttgaaggagggtataacaaacaaaaggaggaggtagaggaaggtttgattggcgctgat
gactag
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