Papaver somniferum (opium poppy): 113280878
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Entry
113280878 CDS
T05758
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit B-like
KO
K07466
replication factor A1
Organism
psom
Papaver somniferum (opium poppy)
Pathway
psom03030
DNA replication
psom03420
Nucleotide excision repair
psom03430
Mismatch repair
psom03440
Homologous recombination
psom03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
psom00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
113280878
03420 Nucleotide excision repair
113280878
03430 Mismatch repair
113280878
03440 Homologous recombination
113280878
03460 Fanconi anemia pathway
113280878
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
psom03000
]
113280878
03032 DNA replication proteins [BR:
psom03032
]
113280878
03400 DNA repair and recombination proteins [BR:
psom03400
]
113280878
Transcription factors [BR:
psom03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
113280878
DNA replication proteins [BR:
psom03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
113280878
DNA repair and recombination proteins [BR:
psom03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
113280878
MMR (mismatch excision repair)
113280878
DSBR (double strand breaks repair)
HR (homologous recombination)
113280878
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
DUF223
CDC24_OB3
Rhabdo_glycop_CD
SH3_Rv0428c
Zn_ribbon_6
Motif
Other DBs
NCBI-GeneID:
113280878
NCBI-ProteinID:
XP_026385250
LinkDB
All DBs
Position
5:2434954..2438653
Genome browser
AA seq
613 aa
AA seq
DB search
MEMEKSVTPNAISTILANPSLDSYSDSEIPQLIIQVVDLKPAGSRFTFKASDGKMKLKAM
LPPNMGSDVNLGNFQNLGLILVQDYNIQIMQKTQEKCLIVLKCEVVAPVLESEIGSDPKS
QEIEFKPKQETGIVLKPKQDVVAKSAAQIVHEQHQNNAPSERMAMTRRVHPLVSLNPYQG
NWTIKVRLTSKGNLRTYRNARGEGCVFNVELTDQDGTQIQATMFNEAANKFYNKFELGKV
YYISKGTLKVANKQFKTVQNDYEMTLNENSEVEEVSEEGSPIPKAVFNFVKIDDLGTYVN
GKELVDVIGVLQSVSPTMSIRRKANNETIPKRDITIADDSNKTVVISLWNDLATTMGQEL
LDVVDSNPIVAIKCLKVGDFQGVSLSSLGKSTVVVNPDVPEAENLKSWYASEGKSTSMTS
IGAGLTNSTSSGARSFYSDRVTISHITSNSSLGGEKPQFFSIKACISFIKPEQLMWYQAC
KTCNKKVTTGHVSEYFCDGCQKNVDTYSLRYILALRVADPSGEAWVSTFNDQAEKILGCS
ADELDKIKQQDEKEFHLKLKQATWTPRLFRVSVAQNEYNGEKRQRITIRAEAPLDFAVES
KYLLEEMSKLQAS
NT seq
1842 nt
NT seq
+upstream
nt +downstream
nt
atggaaatggagaaatcagtaaccccaaatgctatttcaaccatactagcaaacccttct
cttgattcttattctgattctgaaatccctcaactcattattcaagttgtagatctcaaa
cctgctggaagcagatttacattcaaagccagtgatggaaaaatgaaactcaaggcaatg
cttccacccaatatgggatctgatgtcaatttgggaaatttccaaaaccttggcctcatc
cttgttcaggattacaacatacaaatcatgcaaaagacgcaagaaaagtgtttgatcgtt
ttgaaatgtgaagtggttgctcctgtgcttgaaagtgagattggaagtgatcctaaaagt
caagaaattgaattcaaaccaaagcaagaaactggaattgtgttgaagccaaagcaagat
gtggttgctaaatctgcagctcaaattgtccatgaacagcatcagaataatgctccttct
gaacgaatggccatgactagaagagttcatcctcttgtttccctgaatccttaccaaggg
aattggactataaaggttcggctgacaagtaaaggcaacctcaggacatataggaatgct
agaggagaagggtgtgtctttaatgtggaattaacagatcaagatggtacacaaattcaa
gcaacaatgtttaatgaagctgcgaacaagttctacaataagtttgaattgggaaaagtt
tattacatatcaaaaggaactcttaaagttgctaacaagcagttcaaaactgtccaaaat
gattatgagatgactctgaatgaaaattctgaagtggaggaggtatctgaagaaggaagt
cctattccaaaggcagtgttcaactttgttaagattgacgatttgggtacctatgtgaat
gggaaggagcttgtagatgttattggggttcttcaaagtgtttcccctacaatgagcatc
agaaggaaagctaataacgagaccatcccaaagcgtgacataacaattgctgacgactca
aacaaaactgttgtaatttctttatggaacgatcttgccaccaccatggggcaagagttg
ttagatgttgttgacagcaatccgattgttgcaatcaaatgtctcaaggttggagacttc
caaggagtatctttgtcatctctgggcaaaagcactgtggtcgtaaatccagatgttcct
gaagcagaaaacctcaaatcttggtatgcatctgaaggtaaatcaacctcaatgacctct
attggggctggtttgaccaattctacaagtagtggtgcaagatccttctactctgatcgt
gttaccatttctcatattaccagcaactcctctttgggaggagaaaagcctcaatttttc
agcatcaaagcatgcatcagtttcatcaagcctgaacaactgatgtggtaccaagcttgc
aagacatgcaacaagaaagtgactactggtcatgtgtctgaatatttctgtgatggatgc
cagaagaatgtagatacgtacagtttacggtatatattggcattgagagttgctgaccca
agtggtgaagcttgggtatctacattcaatgaccaggcagaaaaaatattaggttgctcc
gctgatgaacttgacaagatcaaacaacaggatgagaaggagttccatttgaaattgaaa
caagcaacatggactcctcgtctatttagagtcagtgttgctcagaacgagtacaatggc
gagaaaagacaacggataactatccgtgcagaggcgccactcgattttgctgtggaatca
aagtatttactggaagagatgtcaaagttgcaagcctcttaa
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