Papaver somniferum (opium poppy): 113282169
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Entry
113282169 CDS
T05758
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH5, mitochondrial-like isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
psom
Papaver somniferum (opium poppy)
Pathway
psom03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psom00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
113282169
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psom03019
]
113282169
03012 Translation factors [BR:
psom03012
]
113282169
Enzymes [BR:
psom01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
113282169
Messenger RNA biogenesis [BR:
psom03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
113282169
Translation factors [BR:
psom03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
113282169
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
dsrm
HA2_N
AAA_22
AAA_19
nSTAND3
ATPase
NACHT
ABC_tran
AAA_30
AAA_16
RsgA_GTPase
Dicer_dimer
Motif
Other DBs
NCBI-GeneID:
113282169
NCBI-ProteinID:
XP_026386905
LinkDB
All DBs
Position
5:89340068..89351673
Genome browser
AA seq
1202 aa
AA seq
DB search
MFCLSSPPQNCCSSPFCKFIHLQNPKKTLVRRKMVVGYSTSSSVYVPPHNRLRSTILVPS
NSSESISSSTRSLDFDSRDNQGSVLYVAPLNNNNNQQQQLSNDFSEDESDFDTDYSSSNC
KGASTFDGIDEWKRKLNMLIRSNDEQETVSRDKKDRHEFEQLSALATRMGLYSRQYARAV
VVSKVPLPNYRFDLDDKRPQREVVIHFGLERRVDVLLREHFSRKPWNIGSMPKVSFSRSS
SYGSIATDDGLFEQQELQTSTSAVMEKIIKRRSLHLRSQQQAWQESEEGQKMQAFRKSLP
AYEERDALLTTISQNQVVVVSGETGCGKTTQIPQYILESEIESGHGALCNVICTQPRRIS
AMAVSERVAAERGEKIGESVGYKVRLEGIKSRDTRLLFCTTGILLRRLLVDRNLKGVTHV
IVDEIHERGMNEDFLLIVLKDLLPRRPELRLILMSATLNAELFSSYFGGAPMLQIPGFTY
PVQTHFLEDVLDMTGYKLTPYNQVDDYGQDKTWKTQKQGVRKRKSRIAFVVEDALEAANF
KEYTPQTRDSLSCWNPDLIGFNLIENILCHICQKERPGAVLVFMTGWDDINALKDQLQAH
PHLGDQSKVLILTCHGSMASSDQRLIFDKPDGEVRKIVLATNMAETSITINDVVFVVDCG
KAKESSYDALNNTPCLLPSWISKAAALQRRGRAGRVQPGECYRLYPKCVYDAFADYQLPE
LLRTPLQSLCLQIKSLQLGSISDFLSRALQSPELLSVQNAVEYLKIIGALDAKENLTILG
HHLSMLPVEPKLGKMLILGAMFHCLDPIVTIVAGLSVRDPFLMPLDKKDLAESAKSQFAG
RYYSDHLTVVRAYEGWKEAEREQAGYEYCWNNFLSAQTLKAIDSLRKQFLSLLMDTGLFS
NDQNTCNAWSHDEHLVRAVICAGLHPGICSVMNKEKSVSLKTMEDGPVLLYSNSVNGKES
SIPYPWLVFNEKVKVNTVFLRDSTGISDSILLLFGGNISKGGLDGHLKMLGGYLEFFMTP
ALAEIYLTIKREFDELIQTKLLNPKMDIHCFQELLSAVRLLVSEDRCEGRFVLNRQIIRP
STNFLTSSTPPPPAPAPGAISRNGSGPGGDNSKSQLQTLVTRAGHEAPLYKTKQVRNIQF
QSTVEFNGMEFVGQPCNNKKLAEKDAAAEALQWLMGGKQSRPEDIERMSALLKPSKNKKQ
HR
NT seq
3609 nt
NT seq
+upstream
nt +downstream
nt
atgttttgtttgagttctcctccccaaaattgttgttcatctccattctgcaagtttata
catcttcaaaaccctaaaaaaaccttggttagaagaaaaatggtagttggttattcaaca
tcatcatctgtttatgtaccaccacataatagattaaggtcaactatattagttccatca
aattcatctgaaagtatttcttcatcaactaggtctcttgattttgattccagagataat
caaggttcagttttatatgtggctcctcttaataataataataatcaacaacaacaacta
tctaatgatttttcagaagatgagtctgattttgatactgattattcttcttccaattgt
aagggtgcttccacgtttgatggtattgatgagtggaaacggaagttgaacatgctcatt
cgcagcaatgatgaacaagagacagtgtcaagagataaaaaggacagacatgagtttgag
caactttcagcactggcaacaagaatgggtttgtatagtcgtcaatatgcaagagcagtt
gttgttagtaaggtgccgctgcctaactacagattcgatctagatgacaagcgtccacag
agagaggtggtcatacattttggtttggaaagaagagtggatgttctgctcagggagcac
ttttcccggaagccttggaatattggaagtatgccaaaggtatccttctccagatcaagc
agctatggcagtattgccactgacgacgggctttttgagcaacaggagctgcagacatcg
acaagtgctgtgatggagaaaatcattaaacggagaagcttacatttgcgcagtcagcaa
caggcttggcaggaatcagaagaaggtcaaaaaatgcaagcatttcgtaaaagtctccca
gcttacgaagaaagggatgcactactgaccaccatttcacaaaatcaggttgttgttgtc
tcaggtgaaactggttgtggtaagaccacgcagattcctcagtacattttagagtctgag
atagaatctggtcatggggctttatgtaatgttatatgtactcaacctagacgaatatct
gctatggctgtctcagaaagagttgcagcagagagaggggagaaaattggtgaatctgtt
ggttataaggttcgactggagggtatcaaaagcagagatactcggcttcttttctgcacc
acaggcattttgttaagaagattgctggtcgataggaatttgaaaggcgtaactcatgtt
atcgtcgatgagattcatgagcgtgggatgaatgaagatttcctacttattgtcttaaaa
gacctccttcctcgtaggccagaattgaggctaatattaatgagtgctaccttgaatgcg
gagcttttctcatcatactttggtggtgctccaatgttacaaatacctggttttacatac
ccagttcaaactcatttcttggaggatgttctggatatgacgggttataagttaactcca
tataatcaagttgatgattatggtcaagataagacatggaaaacacaaaaacaaggtgtc
agaaagaggaagagcagaattgcttttgttgtcgaggatgcacttgaggctgccaacttt
aaggagtatactccacagactagagattcattgtcctgctggaatccggatttgattggt
tttaacctcatagaaaacatcttgtgccacatctgtcaaaaggaaagacctggtgctgta
ttggtttttatgactgggtgggatgatattaatgctctgaaagatcagcttcaagctcat
ccccatttgggtgatcaaagcaaagttttaatacttacatgtcatggttcaatggccagc
tctgaccagaggttgatatttgataagcctgatggtgaggtccggaaaatagtccttgct
actaacatggcagagactagcattaccataaatgatgtggtctttgttgttgattgcggg
aaagcaaaagagtcctcctatgacgcattgaataatactccttgtttgcttccgtcatgg
atctcaaaggccgctgctctacagagaagaggaagagctggtcgggttcaaccaggcgag
tgctaccgtctctatccaaaatgtgtatatgatgcctttgcagactaccaacttccagaa
cttctaaggacaccattgcaatcactgtgcttgcaaatcaaaagtctacagcttgggagc
atttcggacttcctttctagagctttgcaatcaccagagttattatctgttcaaaatgct
gttgagtatttgaaaataattggagcactggatgcgaaggaaaatcttactattctagga
caccacttgtcaatgcttcctgtggagcctaagctaggaaagatgctgattttgggtgct
atgttccattgcctagatccaatagtaactatcgttgctggtttgagtgtcagagatcca
tttcttatgccacttgataagaaagatctcgcagaatctgcaaaatcccagtttgctggc
cgatattatagtgaccatcttacagtggtgcgagcctatgaaggctggaaagaagctgaa
agggaacaagctggatatgaatactgctggaataattttctttctgctcaaacactgaaa
gctattgattccctgcgaaagcagttcctttctttgcttatggatacaggcttgtttagt
aacgatcaaaatacctgcaatgcgtggagccatgatgagcacttagtcagagcagttatc
tgcgcaggacttcaccctggaatttgctcggttatgaacaaggaaaaatcagtttcattg
aagacaatggaggatggtcctgtccttctatattcgaactctgtcaatggtaaagaatca
agcatcccctatccatggttagttttcaatgagaaggtgaaagtaaacacagtttttctg
cgcgattcaacgggaatatctgattccatacttctcctgtttggtggaaacatatctaaa
ggagggctggatgggcacttgaaaatgttgggaggatatttggagtttttcatgacacct
gccttagcagaaatatatcttaccataaagagagagtttgatgagctaattcagacaaaa
cttctgaatcctaagatggatatccattgttttcaagagctgctatcagcagtgcggttg
cttgtatcagaggatcgatgtgagggtaggtttgtgttaaacaggcaaatcataagaccg
tcaacaaattttttaacatcctcaacacctccaccaccagcaccagcaccaggagcgatt
tccagaaatggaagtggacccgggggtgataattccaagagccaacttcaaacattggtg
accagagcgggtcatgaggctcctctttacaagacaaaacaagtaagaaacattcagttt
caatccacagtagagttcaatggaatggaatttgttggacagccttgcaataacaagaag
cttgcagagaaagatgctgcagcagaggctttgcagtggttaatgggtggaaagcaatca
agacctgaagatattgaacgcatgtctgcactgctaaaaccaagcaagaacaaaaagcag
catagataa
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integrated database retrieval system
