Papaver somniferum (opium poppy): 113282424
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Entry
113282424 CDS
T05758
Name
(RefSeq) protein STABILIZED1-like
KO
K12855
pre-mRNA-processing factor 6
Organism
psom
Papaver somniferum (opium poppy)
Pathway
psom03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
psom00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
113282424
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
psom03041
]
113282424
Spliceosome [BR:
psom03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
113282424
Complex C
U5 SnRNP specific factors
113282424
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PRP1_N
TPR_14
HAT_PRP39_N
TPR_19
Suf
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_Syf1_CNRKL1_C
TPR_16
TPR_2
TPR_17
TPR_8
TPR_CcmH_CycH
ubiquitin
Motif
Other DBs
NCBI-GeneID:
113282424
NCBI-ProteinID:
XP_026387202
LinkDB
All DBs
Position
5:complement(111550816..111554373)
Genome browser
AA seq
1029 aa
AA seq
DB search
MTIFLRTLENKTLALNLNPNSTSLETLQLTIEQKSGTPINLQRIFLSGRRLIGTQNSEKT
LINLGIQSNSHLSLEIQVLGGMQAPVAPKLRLEFLSSKPPPNYVAGLGRGATGFTTRSDI
GPARTAPDLPGSTSGGAIGAPPQGGVGRGRGKGGEDEGGAEDDEAEEKGYDENQQFDEFE
GNDVGLFATGEYDEDDKEADAVWEAIDERMDSRRKDRREARLKEEIEKYRASNPKITEQF
ANLKRKLHTVSAQEWDNIPEIGDYSSGRNKKKRFESFVPVPDTLLEKARQEQQNVTALDP
KSRAAGGTETPWAQTPVTDLTAVGEGRGTVLSLKLDRLSDSVSGLTVVDPKGYLTDLKSM
KITSDAEISDIKKARLLLKSVIQTNPKHPPGWIAAARLEEVAGKIQAARQLIQKGCEECP
KSEDVWLEACRLSNPDEAKGVIARGVKTIPNSVKLWMLAAKLEQDVGNKCKVLRKGLEHI
PDSVRLWKAVVELSNEEDARLYLQRAVECCPLHIELWLALARLETYDNAKKVLNKAREKL
TKEPAIWITAAKLEEANGNTGMVGKIIERGIRSLQKEGLDIDREVWMKEAEAAERAGSVL
TCQAIIRNTIGVGVEEEDRKRTWVADAEECKKRGSIETARAIYAHALTVFLIKKSIWLKA
AQLEKSHGTRESLDSLLRKAVTYRPQAEVLWLMGAKEKWLAGDVPAARAILQEAYAAIPN
SEEIWLAAFKLEFENHEPERARMLLAKARERGGTERVWMKSAIVERELGNASEERKLLEE
GLKLFPSFFKLWLMLGQLDDRLGHLEQAKEAYETGIKHCPSCIPLWLSLASLEEKMNGLS
KARAVLTMGRKRNPKSPELWLAAVRAESRNGNKKESEILIAKALQECPASGILWATSIEM
VPRPQRKTKSADALKRCNNDPHVIAVVAKMFWHDRKVDKARNWLNRAVTLAPDIGDFWAM
CYKFELQHGTEETQRDVLKRCVAAEPKHGERWQAISKAVENSHLPVEAILKKAVVILGKD
ENASESGKN
NT seq
3090 nt
NT seq
+upstream
nt +downstream
nt
atgacgatcttcctgagaaccttagaaaacaaaaccctagccctaaacctgaatccaaat
tccacatctttggaaaccctacaactcacaatcgaacaaaaatcaggcactccaataaat
ctccaacgtatcttcttatctggtcgtagattaattggaactcaaaactccgaaaaaacc
ctaatcaatttagggattcaatcaaactcacatctttcactcgaaatacaagtattagga
ggaatgcaagcaccagttgcaccaaaactgcgactcgaatttctgagttcaaaaccacca
cctaactatgtagcaggtttaggtcgtggtgctactgggtttacaactaggtctgatatc
ggtccagctagaactgcaccagatcttccaggtagtactagtgggggtgctattggtgct
ccacctcaaggcggtgttggtcgtggaagagggaaaggtggggaagatgaaggaggagca
gaagatgatgaagctgaggaaaagggttatgatgagaatcaacaatttgatgagtttgaa
gggaacgatgttgggttgtttgcgactggtgaatacgatgaagatgataaagaagcggat
gcagtatgggaagctattgatgagagaatggattcaagaaggaaagataggagagaagct
agattgaaagaagagattgagaaatatagagcttcgaatcctaaaattacagaacaattt
gctaatttgaagaggaaattgcatacggtgtcggctcaagaatgggataatatacctgag
attggagattattcttctgggaggaataagaaaaagaggtttgaatcttttgtacctgtt
cctgatacattgttagagaaagctagacaggagcaacaaaatgttacggcgttggatccg
aagagtagggcagctggtgggacggagactccatgggcgcagacacctgtaacggattta
actgcggttggtgaaggccgaggtaccgttttgtcactgaaattagacagattgtctgat
tctgtatctgggttaactgttgttgatccaaaaggttatttgactgatttaaagagcatg
aaaattactagtgatgctgagatttctgatataaagaaggctaggttgttgcttaaatct
gttatacaaacaaatccaaaacacccaccagggtggattgctgcggcgagactcgaagaa
gttgcagggaaaatacaagctgctaggcaattgatacagaaaggttgtgaagagtgtcct
aagagtgaagatgtttggttagaagcgtgtaggctctcaaatccagatgaagctaaaggt
gtaattgctaggggtgttaagacgattccgaattctgtaaagttgtggatgttagctgca
aaactagagcaagatgtcggaaataaatgtaaggtactgaggaaaggacttgaacacatc
ccagattctgttaggctttggaaagcagtggtggaattatctaatgaagaagatgcaagg
ttatatcttcagagagctgttgaatgttgtccattgcatattgaactttggcttgctctt
gcgaggctggagacgtatgataacgcaaagaaagttttaaacaaggcaagggagaaactg
accaaggaaccggctatttggatcactgctgcgaaacttgaagaagcaaatgggaatact
ggtatggttgggaagatcatagagaggggaattcgctctttacaaaaagaaggattggat
attgatagagaagtttggatgaaggaagctgaggcggcggaacgagcagggtctgttctt
acttgccaggctattattcggaacactattggggttggggttgaagaagaagatcggaaa
aggacttgggttgcggatgcagaggaatgcaagaagagaggttcaattgaaactgctaga
gctatttatgcgcacgcccttacagtgtttctgattaagaagagtatttggcttaaggca
gctcaactagagaagagccatggaactagggaatcactagattctcttctacgtaaagct
gtaacctataggcctcaagctgaggttttatggcttatgggtgccaaagaaaagtggctt
gcaggagacgttcctgctgctagagcaattcttcaagaggcttatgctgcgatacctaac
tcggaagagatttggcttgctgcattcaagttagaatttgagaatcacgaaccggaaaga
gcaagaatgctgcttgctaaagcaagagaaagaggaggtacagagagagtttggatgaaa
tcagccattgttgagagagaattaggaaatgcttccgaggagagaaaattacttgaggaa
ggcctaaaactcttcccatcattttttaaattgtggttgatgctggggcaattggacgac
agacttggtcacttggaacaagctaaagaggcttatgagactggaattaaacattgccca
agctgcatccctctttggctctcacttgctagtttggaggagaagatgaacgggctgagc
aaagctcgagcagttctcacaatgggcaggaagagaaatccaaaaagccctgaactttgg
cttgctgctgttagagctgaatcacgaaatggcaacaaaaaggaatctgagattctaata
gccaaggcattgcaggagtgcccagcaagtgggatactatgggcaacatcaattgagatg
gtcccgcgtccccagcgaaaaactaaaagtgcagatgctctgaaacgatgcaataatgat
ccccatgtcattgcagtggtggctaaaatgttttggcatgacaggaaggtcgacaaagct
agaaactggttaaacagagcggttactcttgccccagatattggtgacttctgggcaatg
tgttacaagtttgaactccagcatggaactgaggagacccagagggatgtcttgaaaaga
tgcgtcgctgcagagccaaagcatggcgagagatggcaggcaatatctaaagccgtagag
aattcccaccttcctgtagaagccattctaaagaaagcagtcgttattcttggaaaagat
gagaatgcttctgagagtggcaaaaactag
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integrated database retrieval system
