Papaver somniferum (opium poppy): 113282774
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Entry
113282774 CDS
T05758
Name
(RefSeq) CCR4-NOT transcription complex subunit 10-like isoform X1
KO
K12607
CCR4-NOT transcription complex subunit 10
Organism
psom
Papaver somniferum (opium poppy)
Pathway
psom03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psom00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
113282774
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psom03019
]
113282774
Messenger RNA biogenesis [BR:
psom03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
113282774
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_2
TPR_1
TPR_19
TPR_MalT
TPR_10
HEAT_Nup120
ARM_TT21_2nd
TPR_4
HDPD
DUF627
RVE6
Motif
Other DBs
NCBI-GeneID:
113282774
NCBI-ProteinID:
XP_026387631
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All DBs
Position
5:complement(133036296..133044313)
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AA seq
838 aa
AA seq
DB search
MDSSSSTTSAATVIASAAAATSGDEDGLITVRSGLAKDAALLFQSRRYSDCLEVLNQLNK
KKQDDPKVLHNIAVAEYFNGGCTDPRKLLEVLNSVKKRSEELAHAAGEQVDASSIGNNSI
SGPKSHQFSAATTASAYTDEFDTSVAKLNIAVVLFHLHEYANALSILEPLYHNIEPLDEA
TALHICLLLLDIALASNNATRAAHVIQYLEKTFTDIIGQGDSGNVAHHQSANTPAKTSSA
PSNSPALDTSNSDAIASANMSEAPLGRSLSEESDSYETLLSTLDIGGQNLARAPGFTINN
DLSRTTTDRAAPVVDLKLKLHLYRVRLLLLTRNLKASKREVKLAVNIARGSDSPTALLLK
SQLEYARGNHRKAIKLLMASNSRTEPWMESMFHNNLGCIHHQLKKHHMSTCYFSRALKSN
SSLRSEKPQKLLTFSQDRSLSVVYNCGLQYLACGKPAAAARCFQKASLIFYYKPLLWLRI
AECCLLALEKGLLNSSEVRVQVIGTGKWRQLLVEDGTTRNRFLELTKLKNGSGSADKVDL
SISFGRQCLLNALHLLDGLELKSQKTGSSALKEDETNEETPLHSSNHKNLAGRDSKASNI
PASNANGDVKDSKGGGSSSSILQSSISLYEDICRRENNMIKQAVLADLAYVELNLENPLK
ALLAANSLLKLPECSRIYIFLGHVYAAEALCHLNRPKEASEHLVAYVDGSQNSELPYSEE
DREKLGVGKGGDIEEINGGSVPPKNVPKEEYQGTLFLKPEEARGSLYVNLAAISAVQGDL
EQAHRFAREALSMIPRNSQAILTSVYVDLLLGKTEDAVSKLKQFDGVRFLPTAVRSGS
NT seq
2517 nt
NT seq
+upstream
nt +downstream
nt
atggattcgtcgtcatcaacaacatcagctgctactgttattgcttctgctgctgccgct
acttctggagatgaagatggacttattactgttaggtctggacttgcaaaagatgctgct
ctgttgtttcagtcgagaagatattcagattgtttggaggttttgaatcaactaaacaag
aaaaaacaagatgatcctaaggttcttcacaatattgctgttgcggagtacttcaatggt
ggttgcactgatccaagaaagctgcttgaagttctcaatagtgttaagaagagaagtgag
gagcttgctcatgcagctggagagcaggtggatgcgagcagtatcggtaataatagtatt
tcaggacctaaaagtcatcagttttctgctgccacaactgctagtgcttacacagatgaa
tttgacacttctgttgcaaaactgaacattgcagttgtgttattccatcttcatgagtac
gcaaatgcattgtcgattttggaaccattatatcacaatattgaaccccttgacgaggca
actgctcttcatatctgtcttctgttactggatattgcattagcctccaataatgcaaca
agagctgctcatgttattcagtatctagaaaaaacatttactgatatcatcggtcaaggt
gatagtggaaatgttgcacatcatcaatctgctaacacaccagcaaaaacctcctctgca
ccaagtaattcccctgcattggacacttcaaattcagatgccatagccagtgcaaatatg
tcagaagctcctctaggaagatccttatcagaggagtcagatagctatgaaactcttctt
tcaaccctagacataggtgggcagaacttagcaagggcgcctggtttcaccatcaataat
gatttatcaagaacaacaacggatcgcgctgctcctgtggttgacctaaagctgaagcta
catttatacagggttcgactgctacttctcacaaggaatttgaaggcatcaaaacgtgaa
gttaaattagcagttaacattgctcgtggtagcgattctcccacggcattgttattgaaa
tcccagctggagtatgctcgaggtaatcaccgaaaagcgataaagctcttgatggcatca
aacagtaggacagaaccatggatggaaagtatgtttcacaacaatctcggatgcattcat
catcagcttaagaaacaccacatgtcaacctgttatttttcgagggcactgaaaagtaac
tcatctcttcgatctgagaagcctcagaagcttttaactttctcacaggatagatctctt
tctgtcgtgtacaactgcggtttgcagtatttggcttgcggtaagccagcagctgcagct
cgttgtttccaaaaggctagcttgatcttttactacaagcctcttctttggttaagaatt
gctgaatgctgcttattagccttggagaaggggcttctgaattcctctgaagttagagtg
caggttattggtacagggaaatggagacagctactggtggaagatgggactacaagaaac
aggtttttggagttgactaaactgaaaaatggttcaggaagtgctgataaagtcgatctc
tcaatctcctttggtcgacagtgcctcctcaatgccctacatctgttagatggtctcgaa
ttgaagtcccaaaaaacagggtcttctgctttgaaagaggatgagacgaatgaagaaaca
cccttacatagttcaaaccacaagaacttagcaggtagggattcaaaggcatctaatatt
ccagcatctaatgcaaatggagatgtgaaagattcaaaaggaggaggaagttctagttcc
atattacaaagctctatttctttgtacgaagatatttgcagaagagagaacaacatgatc
aagcaagcggtccttgcggacctagcctatgtagagctgaatcttgagaacccgttgaag
gcactgttggctgcaaattctcttttgaaacttccagagtgttcgagaatatatatcttc
ttaggtcatgtatatgcagctgaggctctgtgtcatctaaaccggccgaaggaagcttct
gagcatttggtagcctacgtggatggaagccaaaattctgagttgccatatagcgaagaa
gacagagagaaattgggagttgggaaaggtggtgacattgaggagattaatggtggttca
gtgcctcctaaaaacgtgcccaaggaagaatatcaaggtactctcttcctcaaaccagaa
gaagcgcgtggaagtttatacgtgaatcttgctgccatatcagcagtgcaaggtgatctg
gagcaggctcaccggtttgcaagggaagccctgtcgatgatcccgcgaaattcccaagcc
attctaacatctgtttatgtggatctcctgctcgggaaaacagaggatgctgtttccaag
ttgaaacagtttgacggtgttagatttctccctactgcagtgagaagtggttcttga
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