Papaver somniferum (opium poppy): 113283635
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Entry
113283635 CDS
T05758
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 20-like
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
psom
Papaver somniferum (opium poppy)
Pathway
psom03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
psom00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
113283635
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
psom03041
]
113283635
03009 Ribosome biogenesis [BR:
psom03009
]
113283635
Enzymes [BR:
psom01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
113283635
Spliceosome [BR:
psom03041
]
Complex A
U1 snRNP components
U1 related factors
113283635
Complex B
113283635
Ribosome biogenesis [BR:
psom03009
]
Eukaryotic type
Pre-60S particles
Helicases
113283635
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
SWI2_SNF2
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
113283635
NCBI-ProteinID:
XP_026388750
LinkDB
All DBs
Position
5:complement(170998891..171003480)
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AA seq
577 aa
AA seq
DB search
MPYVPPHLRSSSSQSSSSSSQSTTGNTKPSTETLDSSSDQQQQHKTWNSSNNNNNSSSSS
FNGARRTTSSSSSSNLPVSKTMVVPEAVFHQWKPSERVSRLLPEQIEEVRLRLNVDVTAA
PDSAPAPAPIESFTDMCLHESIMKDIAFHEYTRPTSIQAQAMPIALQGRDLLGCAETGSG
KTAAFAIPMIQHCLAQPSVRRGDGPLALVLAPTRELAQQIEKEVKAFSRSMESFRTAIVV
GGTNMAEQRSELRAGVNIVVATPGRFIDHLQQGNTCLSRISFVVLDEADRMLDMGFEPQI
REVMRNLPVKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVSQMLQKVPEN
EKVDQLLSLLVEEAAQADRSGHPLPLTIVFVERKTRCDEVAEALIAQGLHAVALHGGRSQ
SEREAALRNFRNGSTNILVATDVASRGLDVTGVAHVINLDLPKTMEDYVHRIGRTGRAGS
TGQATSFYTDRDMFLVAHIKKAISDAESGNSFAFATGKVARRKEKEAAAAQKEARVALSK
ISVTGPTSVNVEDKYKYMLAPPSSTRKEGAADDAWDD
NT seq
1734 nt
NT seq
+upstream
nt +downstream
nt
atgccgtatgtgccgccacatctaaggagctcctcatctcaatcgtcttcttcgtcttct
caatctacaactggaaacactaaaccttctacagaaaccctagattcttcttctgatcag
caacaacaacataaaacatggaattccagcaataacaacaataactcctcatcttcttca
ttcaatggcgctcgtcgaacaacatcttcttcttcttcgtcgaatctgcctgtgtctaaa
actatggttgttcctgaagcggtgtttcatcaatggaaaccatcagaacgtgtttctcgt
cttctacctgaacagattgaagaggttcgcttacgtctgaatgttgatgttactgctgcg
ccagattccgctcctgcacctgcgccaattgaatcatttacagacatgtgtttgcatgaa
agtatcatgaaagatatagcatttcacgagtacactagaccaacctctattcaggcccaa
gctatgccaattgctcttcagggaagggatcttttgggttgtgccgagacggggagtggg
aaaactgctgcttttgctattccaatgatccagcattgcttagcccagccttctgttcgg
cgaggtgatggtcctcttgcattagtgttggcacctaccagagaacttgcccaacagatt
gagaaagaggttaaggcctttagtagatctatggagtcttttagaactgctattgttgtg
ggcggaacaaatatggcagaacagaggtctgagttgcgggcaggagtaaatattgtggtt
gccacacctggaagatttatcgaccatttgcaacaggggaacacctgtctctctaggatc
tcattcgttgttttggatgaggctgacagaatgctggacatggggttcgagccgcagata
agagaggtgatgcggaatcttcccgtaaagcaccaaacattgctgtttagtgcaactatg
ccagttgaaattgaagcccttgcacaggagtacctcactgacccagtgcaagtaaaggtt
ggaaaagtaagtagccctacagcaaatgtgtctcaaatgctgcagaaggttccggagaat
gagaaggtcgatcagcttctgtctttgcttgtggaagaggcggctcaggctgatagatct
ggtcatccactcccgttaacaattgtttttgttgaaaggaagactaggtgtgatgaagtt
gcagaagccctgatagcgcaaggtctgcacgctgttgctcttcatggtggccgtagccaa
agtgaaagagaagctgctctacgcaattttcgaaatggttctactaatattctggtcgcc
acagatgttgcatctcgtggtttagatgtcacaggagttgctcatgttatcaaccttgat
cttcccaagacgatggaggattatgtgcaccggattggaagaacagggcgtgcaggatcg
actggacaggctacttcattttacacagatcgtgacatgttcctcgtggcccatattaag
aaagctatttcagatgcagaatctgggaactcgtttgcatttgcaactggcaaggttgca
aggcggaaagaaaaagaggcagcagctgcacagaaagaagcgagggttgcattatcaaaa
atttccgtgacaggtccaacctcagtaaatgtagaggataagtacaagtacatgcttgcg
cctccttcaagtacaaggaaagagggtgccgctgatgatgcttgggatgactaa
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