Papaver somniferum (opium poppy): 113284418
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Entry
113284418 CDS
T05758
Name
(RefSeq) pre-mRNA splicing factor SR-like 1 isoform X1
KO
K12850
pre-mRNA-splicing factor 38B
Organism
psom
Papaver somniferum (opium poppy)
Pathway
psom03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
psom00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
113284418
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
psom03041
]
113284418
Spliceosome [BR:
psom03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
113284418
Complex C
U4/U6.U5 tri-SnRNP related factors
113284418
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Paralog
Gene cluster
GFIT
Motif
Pfam:
PRP38
PRP38_assoc
Motif
Other DBs
NCBI-GeneID:
113284418
NCBI-ProteinID:
XP_026389653
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Position
5:205978840..205983620
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AA seq
445 aa
AA seq
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MEIQTSGKPIDSLLEKVLCMNILSSDYFKELFRLKTYHEVIDEIYNQVDHVEPWMTGNCR
GPSTAFCLLYKFFTMKLTVKQMHGLLKHQDSPYIRAVGFLYLRYAADPKTLWGWFEPYVT
DDEEFSPGSNGRMTTMGVYVRDLLLGQYYFDTLFPRTPVPIMRQIVSNLEQMKLPTKHAG
VTGETTRHGSDDTARRPPSVKAALSVSFGQRAPHRASTRDSSPVRRTLPPPQDRNISDEA
RRSPSNYRSRSHDSDRGRSDRGRDRDRSDRDRERDRSDRDRDRDRSDRDRGRDRDHSERG
RSRDRDCYDRDRERDRDVDRDRRHDYERRGSQSRRDDDSRSSRYAERESSSRHRRSDSHG
SRSRSRSRSRSRSRSLQVPPNNHHSDSSLKVEENKEKNSVSSNLAKLRDLYGDTSTQRGS
ESGTERRAKDSSNEEVFKLGGSTWR
NT seq
1338 nt
NT seq
+upstream
nt +downstream
nt
atggagatacaaacatcaggaaaaccgattgattcattgttggagaaggttctttgtatg
aacatcctttcttcagattactttaaagagctttttagattgaagacttaccatgaagtt
atcgatgagatatataatcaagttgatcatgtagagccatggatgactgggaattgtagg
gggccatcaacggcattttgccttctgtacaagttcttcacaatgaagcttactgttaaa
caaatgcacggtctcttgaaacaccaagattcgccttatattagagctgttggatttctt
tacctgcgatatgctgctgatccaaaaactttatggggctggtttgagccatatgtcaca
gatgatgaggaattttctcctggatcaaacggacgaatgacaactatgggtgtctatgta
cgtgatctacttcttggccagtactacttcgataccttgttcccgcggactcctgtgcca
ataatgaggcagattgtctctaaccttgagcaaatgaaactccccacgaaacatgctggt
gttactggggaaaccacccgtcatggatcggatgacactgcacgtcgaccaccttctgtg
aaagctgccctttcagtctctttcggccaacgtgctcctcaccgagcttcaacgagagat
tcatcaccagttcgccggacattgccaccacctcaggatagaaacatcagtgacgaggca
cgaagatctcccagcaactatagaagccggagccatgactctgatcggggtcgttctgac
agaggcagagaccgagatcgttccgacagagatagagagagagatcgttctgacagagat
agagacagagatcgttctgatagagatagaggtcgagatcgagaccattcagaaagaggg
agatcccgagatcgtgactgttatgacagagatagggagcgagaccgggatgtggacaga
gacaggagacacgactacgagcggcgtgggagtcagagccgtcgagacgacgatagcagg
tcttctaggtatgcagaaagagagagtagcagcaggcatcgtagatcagattcacatggt
agtagaagcagaagtagaagcaggagtagaagcagaagccggagtttgcaggtaccacct
aacaatcaccattcagattcttctctaaaagtagaagaaaataaggaaaagaattcagtt
tcgagcaatctggccaagttgagggatttatatggagatacaagtactcagagaggaagt
gaaagtggaacagaacggcgtgcaaaagatagcagtaacgaagaggttttcaaacttggt
ggttctacttggaggtga
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