Papaver somniferum (opium poppy): 113287134
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Entry
113287134 CDS
T05758
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH9-like
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
psom
Papaver somniferum (opium poppy)
Pathway
psom03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psom00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
113287134
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psom03019
]
113287134
03041 Spliceosome [BR:
psom03041
]
113287134
03009 Ribosome biogenesis [BR:
psom03009
]
113287134
03016 Transfer RNA biogenesis [BR:
psom03016
]
113287134
Enzymes [BR:
psom01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
113287134
Messenger RNA biogenesis [BR:
psom03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
113287134
Spliceosome [BR:
psom03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
113287134
Complex C
U4/U6.U5 tri-SnRNP related factors
113287134
Ribosome biogenesis [BR:
psom03009
]
Eukaryotic type
Pre-60S particles
Helicases
113287134
Transfer RNA biogenesis [BR:
psom03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
113287134
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
DEXQc_Suv3
ResIII
Helicase_C
ZapC_N
ATPase_2
nSTAND3
Motif
Other DBs
NCBI-GeneID:
113287134
NCBI-ProteinID:
XP_026391600
LinkDB
All DBs
Position
1:54716735..54723213
Genome browser
AA seq
989 aa
AA seq
DB search
MGFLKRKPEGNHWVEELSDAQKKQKSLIGEDISAVAACIHEVSYPKGYTPPLRRCNNSNR
KPAKEYPFSLDSFQSEAIKCLDKGESVMVSAHTSAGKTVVAQYAIAMSLRDKQRVIYTAP
IKALSNQKYREFKEEFSDVGLMTGDVTIEPNASCLVMTTEIWRSMQYKGSEIMREVAWVI
FDEVHYMRDRERGVVWEESIVMAPKNSRFVFLSATVPNAKEFADWVAKVHRQPCHVVYTD
YRPTPLQHYVFPSGGEGLYLVVDEKGKFLEDSFQKALNAVPLDGEGDNKNKRIGKWQKGL
VACKSGEKSDIYKLVKMIIKRQYDPVIVFSFSKRECESLAMMMAKMNLSTDVEQENIEEI
FWNAMDLLSDDDKKLPQVSNLLPLLKRGIGVHHSGLLPILKEVIEILFQEGLIKCLFATE
TFSIGLNMPAKTVVFTNVRKFDGDKFRWISSGEYIQMSGRAGRRGIDKRGICILMVDEKL
EPSTVKMMVRGSADCLNSAFHLSYNMLLNQMRREDGNPEHLLKNSFYQFQSDHAIPDLMS
LAKKLKEEKDSIMIDEEETLMNYYNLLEQHHKLKKDINDIVFCPKYCLPFLKSGRLISVQ
CTRGDNNSSFSLEDQVTWGVVIKYERVRAISEDDSRGKPEDANYKVHVLTRCVVSKDGKK
TIKIVPLEEQGEPVLVSVPLSQIDALSVRCLDVPKDLLPLSAREHFFKMACKCVYGDTKG
SLLLDPEEDMKVQHKYYKKFVSRMETLESQFSKHEVAKSPLIKEKLKALRLKKELEAKIM
LIRNNVSSSKALAFKDELKARMRVLRNLKYVSRAGVVELKGKVACEITSADELTLTELMF
KGVFNRVTVEEMISLLSCFVWQEKLLDAQKPRERLDLLFTELQETAKSVANIQLNCKVPI
DIEGFVNSFRPDIMEVVYAWAKGSKFCEIMEITQVFEGSLIRAIRRLEEVLQQLTEAAKS
LGDTQLEAKFQEAVIKIKRDIVFAASLYL
NT seq
2970 nt
NT seq
+upstream
nt +downstream
nt
atgggattcttgaagaggaaaccagaaggaaatcattgggtagaagaactcagtgatgca
caaaagaaacagaaatctctaattggcgaagatatttcggcagtagcagcttgtattcac
gaggtatcgtatcctaaaggatatacgcctcctcttcgtcgttgtaataattctaatagg
aaaccagcaaaggaatatccgtttagtcttgattcatttcaatcagaagcaattaaatgc
ttagataagggagaatcagtgatggtatcagctcatacttcagctggtaaaactgttgta
gctcagtatgcaattgctatgtctttgagagataaacaacgtgttatttatactgctcca
attaaagctcttagtaatcagaagtatagggaattcaaagaagaattctctgatgttggc
ctaatgactggagatgtaactattgaacctaatgcttcttgcttggttatgacaactgaa
atttggcgtagcatgcaatataagggatcagagattatgagggaagtggcatgggtaata
tttgacgaagtacattatatgcgagatagagaaagaggtgttgtttgggaagagagtatt
gtaatggcacccaagaattcccgctttgtgtttctctctgcaactgtgcctaatgccaag
gagtttgcggattgggttgcaaaggttcatcgacaaccatgccatgttgtttacacggat
tatcgtcctacaccacttcagcattatgtgtttccttctggaggggagggtttatatttg
gttgtggatgagaagggtaaatttctggaagatagcttccagaaagccttaaatgcagtt
cctcttgatggtgaaggagacaataaaaataagagaattgggaaatggcagaaaggttta
gtggcatgtaaatcaggcgaaaagagtgatatctataagttggtgaagatgataattaag
cgccagtatgatcctgttatagttttcagttttagcaaaagggagtgtgaatctctcgct
atgatgatggctaagatgaacctgagtaccgatgttgagcaagaaaatatagaagagatt
ttctggaatgcaatggacttactgtcggatgatgacaaaaagcttcctcaggtgtcaaat
ttgttacctttgttgaagcggggaataggtgtgcatcattctggcttgctacctattttg
aaagaagtaatagagatactctttcaagaaggtctgatcaagtgtttgtttgcaacagag
acattcagcatagggctaaacatgcctgcaaaaactgtggtattcacaaatgtgcgtaaa
tttgacggggataagttcagatggatatccagtggagagtatatacagatgagtggtcgt
gctggccgtcgaggaatcgataagcgcgggatatgtattctcatggttgatgagaagctg
gaaccatctacagtaaaaatgatggtgcggggaagtgcagactgtttgaacagtgccttc
catctcagttacaatatgcttttgaatcaaatgcggcgtgaagatggcaatcctgagcat
ctgcttaagaactcattttatcaatttcagtctgaccatgccattccagatcttatgagc
ctagcgaaaaaacttaaagaagagaaagattcaattatgatcgatgaagaagagactttg
atgaattactacaatcttttagagcagcaccataagttgaagaaggatattaatgatatt
gttttctgtccaaaatactgtttaccctttttaaagtctggcagactgattagtgtccaa
tgtacaagaggtgataataactcatctttctctcttgaggaccaagttacctggggagtg
gtaatcaaatatgaaagggtgagagcgatttctgaagatgattctagggggaagcctgag
gatgcaaattacaaagtacatgttcttacaagatgtgttgttagcaaggatgggaaaaaa
acaataaagatcgtgcccttggaagagcagggagagccagttctggtttctgtgcctcta
tcccagattgatgcgcttagcgttcgatgtttggacgtaccaaaagatctgttgccgttg
tcagctcgagaacatttttttaagatggcctgtaaatgtgtttacggagataccaaagga
tctctgctcctggatcctgaggaggatatgaaggtccagcataaatattataagaagttt
gtttctcggatggagacgcttgagagccaattcagcaagcatgaagttgcaaagtccccg
cttattaaagaaaagttaaaagccttacgattgaagaaagaattggaagcaaaaatcatg
ctaatcaggaataatgtgagttcttctaaagcactggcttttaaagatgaactcaaggca
aggatgcgagttcttcggaatctgaagtatgtctcaagagctggtgttgtggagttgaag
gggaaggttgcctgtgagatcaccagtgctgatgagctgacactgacagagctcatgttt
aagggtgtgttcaacagagttacggtcgaggagatgatttctttgctatcgtgttttgtg
tggcaggaaaaacttctggatgcccagaaacccagggaaaggcttgacctgctgtttact
gagctgcaagagacagcaaaaagtgttgccaacattcagcttaactgcaaagtcccaatt
gacatagaaggctttgtaaattccttcagacccgatattatggaggttgtgtatgcgtgg
gcaaaaggatctaaattctgtgaaataatggagatcactcaggtttttgagggtagtttg
atcagggcaattaggagactggaggaagttcttcagcagctaacagaggcagcaaagtct
ctaggtgatacccaacttgaagccaagtttcaagaagctgttattaaaatcaaaagggat
atcgtctttgcagcgtctctgtatttgtaa
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