Papaver somniferum (opium poppy): 113287259
Help
Entry
113287259 CDS
T05758
Name
(RefSeq) protein PAT1 homolog 1-like
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
psom
Papaver somniferum (opium poppy)
Pathway
psom03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psom00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
113287259
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psom03019
]
113287259
Messenger RNA biogenesis [BR:
psom03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
113287259
mRNA degradation factors
5'-3' decay
Decapping complex
113287259
SSDB
Ortholog
Paralog
GFIT
Other DBs
NCBI-GeneID:
113287259
NCBI-ProteinID:
XP_026391729
LinkDB
All DBs
Position
6:32138832..32146480
Genome browser
AA seq
817 aa
AA seq
DB search
MEGFDGGSGVQQTPNLNNFNEFTASSSGNTLFDASQYAFFGKDVLEEIELGGLDDEDGEA
PLVGFDDAEYQVPNREEGEGLGSLSDIDDLTSTFSKLNRTVSEPARPGVIGDRGGSFSRE
SSSAAEWAQEGDLWFDQNVYDSDGGQDSKRWSSQPSAHHPDSKPLYRTSSYPQQLQQPPH
FSSEPVLVPKSSFTSYPPPGGRSQQGSPNHHSRHLNIQSLGGSQMPFSAPNISPFSNPQH
HLAGLSHGLHYGGNMPQFPPPGLPTGRSQNNWGVNQANLFSGDHSSILNNMLQQLPHPNG
ALMPQQLMAQQQQRLHHPVQPSLAHFQALQSQLFNTHPSSSPHVMSKYEQMLGMTDMRDQ
RPKSSQRGRQNLRFSQQASDNSAQKSDNGWPQFRSKYMTADEIESILRMQHAATHSNDPY
VDDYYHQACLSKKTAGSRLKHHFCPTHLRDLPSRSRSNTEPHAFLQVDALGRVPFSSIRR
PRPLLEVDPPSASGDDQKISEKPLEQEPMLAARIAIEDGLCLLLDVDDIDRFLQFSQPQE
GGTQLRRRRQVLLEGLAASLQLVDPLGKGVGQTVGLSPKDDIVFMRLVSLPKGRKLLSKY
LQLLFPGSELTRIVCMAIFRHLRFLFGGLPSDSGASETTSNLARVVSTCVFGMDLGSLSA
CLAAVVCSSEQPPLRPIGSSAGDGATVILKSILERATDLLTDPHASSNYSMPNRALWQAS
FDEFFGLLTKYCMSKYDSIMQSLLLQAHPNTGVIGSEAARSISREMPVELLRASLPHTNE
QQRKVLLDFAQRSMPVTGFNNHGGSGGGHINSESVVG
NT seq
2454 nt
NT seq
+upstream
nt +downstream
nt
atggaaggatttgatggtgggagtggtgttcaacaaactcccaatcttaataattttaat
gaattcacagcgagttcttcaggaaacacgctctttgatgcatcgcaatacgcattcttt
ggcaaggatgtgctagaagaaattgagttggggggtttagacgatgaagatggtgaggcg
ccgttagtaggttttgatgatgccgagtatcaggttcccaacagagaagagggtgaaggt
ttaggatctttgtcggacattgatgaccttacaagtactttttcaaagttgaacagaacc
gtcagcgagccagcgagaccaggagtgattggtgataggggaggttctttttctcgagaa
agttcttctgctgcagaatgggcacaagagggtgatttgtggtttgatcagaacgtctac
gactctgatggtggtcaagatagtaagagatggtcgtcacagccttctgctcatcatcct
gattcaaaaccactgtatagaacttcttcatatcctcaacagctacaacaacctccacac
ttctccagtgagcctgttttagtaccaaaatcctcgttcacttcataccctccaccaggt
ggtcggtctcaacagggttcaccaaatcaccattctcgccaccttaatattcaatctcta
ggtggatcacagatgcctttctcggcccccaacatttctcctttctctaatcctcagcat
catttggctgggttatctcatggattacattatggtggaaatatgcctcagttccctcca
ccaggactccctactggtaggtcgcagaacaactggggggttaaccaggctaatctattt
tctggggatcattcaagtatcttgaacaatatgttacagcagttacctcatccgaacggt
gctctaatgcctcaacagctaatggcgcaacaacaacagagacttcaccatccagtccaa
ccgtctttggctcattttcaggctttgcaatctcagttattcaacacgcatccttcatca
tcccctcatgtaatgagcaagtacgaacaaatgcttgggatgactgatatgagagatcaa
aggccaaaatcatcacaaagaggtaggcagaacctgcggttttctcagcaggcctctgat
aacagtgcccagaaaagtgataatgggtggccacagttcagatccaagtacatgactgct
gatgagattgaaagtattctgaggatgcagcatgcggctacccatagtaatgatccttat
gtagatgattactatcatcaggcttgcttgtcaaaaaaaactgctgggtcgaggttgaaa
catcatttttgtcctactcacctgagggacctgccatctcggtcacgttcaaatactgag
ccacatgcattccttcaggtagatgctcttggaagagtccctttctcatccataagaagg
ccgcgcccacttcttgaagttgaccctccgtcagcttctggggatgatcagaaaatttcc
gagaagccacttgaacaagagccaatgcttgcagccagaatagcaatcgaggatggcctg
tgtctacttctcgatgtggatgacattgacaggtttctgcagttcagtcaaccacaagaa
ggtgggacacagctgaggcgcaggcgtcaggttctgttagaaggtcttgcagcctcactt
cagttggttgacccgcttgggaagggtgtgggccagacagttggtctctcccctaaggac
gacattgtatttatgcgcttagtctctctgccaaaaggtcgaaagctcctctcgaagtac
cttcagcttctttttcctggaagtgagcttacacgaatagtatgtatggccatttttcgt
catctgaggtttttatttggtggattaccatctgattctggagcatctgagactacaagt
aatcttgcaagagttgtttcaacgtgcgtgtttggcatggatcttggatctcttagtgct
tgtctcgctgcggttgtttgttcctcggagcagcctccactacgcccaattggaagctct
gccggagatggggcgactgtaatcttaaaatcaattcttgagagggccactgacctgcta
actgatccccacgcctcaagcaactacagtatgcctaatcgggctctatggcaggcatcc
ttcgatgaattctttggccttctcacaaagtactgtatgagtaagtatgacagcattatg
cagtcactgttattgcaggcccatcccaacacaggagttatagggtctgaagcagcaaga
tctataagtagggagatgccagtggaactgctacgtgcaagtcttcctcacacaaatgaa
cagcagcggaaggttttgttggattttgcacagcgttccatgcctgttactggatttaac
aaccatggtggtagtggtggtgggcacataaattctgaatcagtggtgggttaa
DBGET
integrated database retrieval system
