Papaver somniferum (opium poppy): 113288046
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Entry
113288046 CDS
T05758
Name
(RefSeq) E3 ubiquitin-protein ligase COP1-like
KO
K10143
E3 ubiquitin-protein ligase RFWD2 [EC:
2.3.2.27
]
Organism
psom
Papaver somniferum (opium poppy)
Pathway
psom04120
Ubiquitin mediated proteolysis
psom04712
Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:
psom00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
113288046
09150 Organismal Systems
09159 Environmental adaptation
04712 Circadian rhythm - plant
113288046
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
psom04121
]
113288046
Enzymes [BR:
psom01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
113288046
Ubiquitin system [BR:
psom04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
113288046
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
113288046
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_EML_2
Beta-prop_TEP1_2nd
Beta-prop_RIG_2nd
WDR55
Beta-prop_EIPR1
Beta-prop_DCAF4
zf-C3HC4_2
WD40_MABP1-WDR62_2nd
Beta-prop_WDR19_1st
Beta-prop_TEP1_C
WD40_MABP1-WDR62_1st
EIF3I
zf-C3HC4
Beta-prop_HPS5
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
WD40_RFWD3
Beta-prop_CAF1B_HIR1
WD40_like
zf-C3HC4_3
zf-RING_UBOX
zf-RING_2
Beta-prop_WDR75_1st
Beta-prop_DCAF12
Beta-prop_SCAP
Beta-prop_WDR35_TULP_N
zf-C3HC4_4
U-box
zf-RING_5
Beta-prop_IFT140_1st
Beta-prop_SPT8
Beta-prop_IFT122_2nd
DUF1664
zf-RING_10
zf-Nse
Motif
Other DBs
NCBI-GeneID:
113288046
NCBI-ProteinID:
XP_026392771
LinkDB
All DBs
Position
6:76860113..76865655
Genome browser
AA seq
690 aa
AA seq
DB search
MGGGSMGALVPSVKSEGKSEAVGASSEAVGAASTAMVEVGKQNEEVEEEGGRGRGGGEMD
KDLLCPICMQIIKDAFLTACGHSFCYMCIITHLNNKNDCPCCGHYLTNNQLFPNFLLNKL
LKKTTARQIGKNASPLEHLRQSLQHGYEVSVKELDSLLSLLSEKKRRMEQEEAETNMKVL
LDFLHCLRKQKVEELTELQTDIQYIKEDINLVERQRMDLYRTRERYSVKMRMHMDDHAAA
KARPLSIDKQSSGLVSSGRTTQSGLGFGSLVNRKADPKPQESSQGYQKKEAMGGSDPPSV
SHSGLAMARKRRIHAQFNDLQECYLQKRRQWVSQTRNQQERSIYTSKREGYHAALEDFQS
VLTTFTRYSRLRVIAELRHGDLFHSANIVSSIEFDRDDELFATAGVSRRIKVFEFASVVN
EPADVHCPVVEMSTRSKLSCLSWNKFTKNHIASSDYEGIVTVWDVNTRQSVMEYEEHEKR
AWSVDFSRTEPSMLVSGSDDCKVKVWCTNQEASVLNIDMKANICCVKYNPGSSYHVAVGS
ADHQIHYYDLRNVSAPLHVFSGHRKAVSYVKFLSNNELASASTDSTLRLWDVKENVPVRT
FRGHTNEKNFVGLTVNSEYIACGSETNEVFVYHKAISKPAAGYKFGSSELDDTDDDAGSY
FISAVCWKSDSPTMLTANSQGTIKVLVLAA
NT seq
2073 nt
NT seq
+upstream
nt +downstream
nt
atgggcgggggatcaatgggggcactagtaccatctgtgaaaagtgaaggtaaatcagaa
gcagttggagcttcatcagaagctgtaggtgctgcttcaacagctatggttgaagtgggg
aaacaaaatgaagaagtagaagaagaaggtgggagaggaagaggaggaggagaaatggat
aaagatttgttatgcccaatatgcatgcagataattaaagatgcatttctcacagcttgt
ggacatagtttttgttatatgtgtatcattactcatcttaataacaaaaatgattgtcct
tgttgtggtcattacttaaccaataatcaactcttccccaattttcttctcaataagctt
ttgaagaaaaccactgctcgccaaataggaaaaaatgcatctccactagagcaccttcga
cagtcattgcaacatggttacgaggtttcagtgaaggagctagatagcctattatcactc
ctttcagagaaaaagagaagaatggaacaagaggaagctgaaacaaatatgaaggttctg
cttgacttcttgcactgcttaaggaagcaaaaggtcgaagaattaactgagttacaaact
gatattcagtacattaaagaggacataaatttagtcgagagacagagaatggacttatac
cgaacaagggagagatactcggtaaaaatgcggatgcatatggatgatcatgctgcagca
aaagcgcgaccattgtcgattgataagcaaagtagtgggcttgtttccagtggtcgtaca
actcaatcaggattagggtttggcagtttggtaaataggaaagctgacccaaagcctcaa
gagagctcccaaggttaccaaaaaaaggaggcaatgggcggatcagatccaccaagcgtt
tctcattctggcttggctatggcaagaaagaggcgaatccatgctcagtttaacgattta
caagaatgttacttacaaaaaaggaggcaatgggtcagtcaaactcgtaaccagcaagag
aggagcatatatacatcaaaaagggaaggttaccatgccgcccttgaggactttcagtct
gttctgactacctttacacgatacagtcgtttgagggtaattgcggagcttaggcatgga
gatttattccactcggctaatattgtatcaagtatagaatttgatcgggatgatgagttg
tttgcaactgccggagtttctcgacgcatcaaagtttttgaatttgcttcggtagttaat
gaacctgcagatgtgcactgcccagttgtggaaatgtctaccagatccaaactaagttgc
ctgagctggaacaaattcactaaaaaccacatagcaagtagcgattacgaaggaatagtt
actgtttgggatgtaaatactcgtcagagtgtaatggaatacgaggaacacgaaaaacga
gcatggagtgttgatttttcgcgtacagagccttcaatgcttgtgtctggtagtgatgat
tgcaaggttaaagtttggtgtaccaaccaagaagctagtgtactgaatatcgacatgaaa
gctaatatttgttgcgtcaaatataatcctggttcaagctaccatgtggcggttggttca
gctgatcatcaaattcattattatgacttgagaaatgtcagtgccccactacatgttttc
agtggccatagaaaagctgtttcttatgtaaaattcttgtctaacaacgaactggcgtca
gcatctactgacagtacattacgattgtgggatgtaaaggaaaatgtgccggtgcgtaca
tttagaggccacactaatgagaagaacttcgtgggtctaacagtaaatagtgaatatata
gcttgtggaagtgaaacgaatgaagtttttgtttatcacaaggctatctcaaaacctgcc
gccgggtataagtttggttcatctgaattagatgataccgatgatgatgcagggtcttac
ttcataagtgctgtttgttggaagagcgacagtccaacaatgttaactgccaatagtcaa
ggaactatcaaagtgctagttcttgctgcttaa
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