KEGG   Papaver somniferum (opium poppy): 113288266
Entry
113288266         CDS       T05758                                 
Name
(RefSeq) THO complex subunit 3
  KO
K12880  THO complex subunit 3
Organism
psom  Papaver somniferum (opium poppy)
Pathway
psom03013  Nucleocytoplasmic transport
psom03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:psom00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    113288266
  09122 Translation
   03013 Nucleocytoplasmic transport
    113288266
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:psom03019]
    113288266
   03041 Spliceosome [BR:psom03041]
    113288266
Messenger RNA biogenesis [BR:psom03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     113288266
Spliceosome [BR:psom03041]
 Complex C
  Other components
   EJC/TREX
    113288266
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    113288266
SSDB
Motif
Pfam: Beta-prop_THOC3 Beta-prop_IFT122_1st Beta-prop_WDR5 WD40 WD40_Prp19 WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_WDR3_1st Beta-prop_EML_2 ANAPC4_WD40 EIF3I Beta-prop_CAF1B_HIR1 WD40_Gbeta WDR55 Beta-prop_WDR36-Utp21_2nd Beta-prop_WDR3_2nd Beta-prop_TEP1_2nd Beta-prop_WDR19_1st Beta-prop_NOL10_N Beta-prop_WDR36-Utp21_1st Beta-prop_RIG_2nd Beta-prop_Aladin Beta-prop_TEP1_C WD40_MABP1-WDR62_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_WDR75_1st Beta-prop_Vps41 DSE1_N Beta-prop_WDR35_TULP_N eIF2A NBCH_WD40 WD40_MABP1-WDR62_1st Beta-prop_IFT140_1st WD40_RFWD3 Beta-prop_EIPR1 Beta-prop_HPS5 Beta-prop_EML Beta-prop_DCAF12 Tricorn_2nd CFAP251_N TRM82_WD WDR90_beta-prop_4th Beta-prop_WDR41 Beta-prop_IFT80_2nd PAC11 Beta-prop_ACSF4 ASA1 WDR93 WD_LRWD1 Beta-prop_Nup120_160 PROPPIN Beta-prop_WDR11_1st IceA2
Other DBs
NCBI-GeneID: 113288266
NCBI-ProteinID: XP_026393028
LinkDB
Position
6:complement(85643189..85646435)
AA seq 318 aa
MEETTTPQVPFKNNLHSREFQGHKKKVHSVAWNCLGTKLASGSVDQTARIWHIEPHGHGK
VKDIELKGHTDSVDQLCWDPKHAELIATASGDKTVRLWDARSGKCSQQVELSGENINITY
KPDGTHIAVGNRDDELTILDVRKFKPIHKRKFGYEVNEIAWNTTGEIFFLTTGNGTVEVL
AYPSLKALHTLSAHTAGCYCIAIAPNGRYFSVGSADSLVSLWDLSEMLCVRTFTKLEWPV
RTISFNHTGEFIASASEDLFIDISNVESGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDK
NKYQADEGVFRIFGFEST
NT seq 957 nt   +upstreamnt  +downstreamnt
atggaggaaaccactacaccacaagtaccatttaaaaacaatcttcatagcagagaattt
caaggtcacaagaagaaggtccattcggtagcttggaattgcttaggcacgaagctcgct
tcaggttctgttgatcaaaccgctcgaatttggcacattgagcctcacgggcatggcaag
gttaaagatattgaactgaaggggcacactgatagtgtggatcaattatgttgggaccct
aaacatgctgaattaattgcgactgcatctggtgataaaactgtccgactctgggatgct
cgtagtggtaaatgctctcaacaggtggaactcagtggggaaaatattaatattacatat
aaaccagatgggacacatatagctgttggaaatagggatgatgagctaacaatactggat
gttcgtaaatttaagccaattcacaagcgcaaatttggttatgaggtaaatgaaattgct
tggaatactacgggagagattttctttcttacaacaggaaatggtactgttgaggttcta
gcttacccatctcttaaagcactacacactctgtcagctcatacagcaggttgctattgc
atcgcaattgctcctaatggaagatatttttctgttgggagtgctgattctctagtcagc
ctctgggatctgtcagagatgctctgtgtacggacctttacaaagcttgaatggcctgtc
agaaccataagcttcaatcacacgggagagtttattgcttcagccagtgaagatctattt
attgatatttctaacgtcgaaagtggtcgaacggttcatcaaattccttgtcgggcggca
atgaacagcgtggaatggaatcccaaatataacttattggcgtatgcaggagacgacaag
aacaagtaccaggctgatgaaggtgttttcagaatatttgggttcgagagcacctaa

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