Papaver somniferum (opium poppy): 113288422
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Entry
113288422 CDS
T05758
Name
(RefSeq) protein BREAST CANCER SUSCEPTIBILITY 1 homolog
KO
K10683
BRCA1-associated RING domain protein 1
Organism
psom
Papaver somniferum (opium poppy)
Pathway
psom03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
psom00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
113288422
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psom03019
]
113288422
04121 Ubiquitin system [BR:
psom04121
]
113288422
03036 Chromosome and associated proteins [BR:
psom03036
]
113288422
03400 DNA repair and recombination proteins [BR:
psom03400
]
113288422
Messenger RNA biogenesis [BR:
psom03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
113288422
Ubiquitin system [BR:
psom04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
BRCC complex
113288422
Chromosome and associated proteins [BR:
psom03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
113288422
DNA repair and recombination proteins [BR:
psom03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
113288422
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCT
zf-HC5HC2H
zf-C3HC4_2
zf-C3HC4
zf-C3HC4_3
zf-RING_2
zf-RING_6
RTT107_BRCT_5
zf-RING_UBOX
BRCT_2
zf-HC5HC2H_2
zf-RING_5
zf-C3HC4_4
zf-RING_10
PHD_NSD
zf-rbx1
PTCB-BRCT
Motif
Other DBs
NCBI-GeneID:
113288422
NCBI-ProteinID:
XP_026393235
LinkDB
All DBs
Position
6:complement(92577931..92583735)
Genome browser
AA seq
1170 aa
AA seq
DB search
MEALVNLEKMGRELKCPICLGLLKSAVSLTCNHLFCDLCIKKTMKSDSHCPVCKVPFGRR
EVRSAPNMDNLVSIYKSMEVASGINTLASQTTAHTDGSDEIVCAQNKPQYAAHSDSPQTR
GKAKRKRKFKRKTSKDCDTADNVSQPSQEPTFPAKKRVQVPQCLLSETPMRSENFAVGRL
DEISEDGPGSSLFKSKGKSFSNDKGEPAFAPFFWLREDNPDDDVEKPSGQLMTSDDSKDT
PRKIPSFSDLKDSDDESPTKSIGNGEEKTESKIAYLFDSEMFEWTQRPCSPELFSTPEKT
KAGYKELNTIEDDECVVASSTQGAPTGEAVASETVKAVNCEQENENIDEKLAPVKAKSSK
NRNKSKKSKRKSKRNTGIAKEKCAKISTDEVLGDVCIDLGEVGEVSNESVKCATNSTATN
VRNKICSKNKKARLNSFDANKVTDELHEAIEVNSENHATKETATRSPTSLDDQHTKSIHK
NSEKIKKLDIQLKRTNARSLKDKTVAAAAVEVVEEVQKNENQENGKANTKSLAQTDLQVD
PPRTSELEERARNKPRNAKILGKRNCAREFGNQKRLNFTDDSVKGVSAGEVAVASSKVVD
PSKTSELEKRTTDKHRDTKIVGDKSCMQELREGKRVKFSTDNCVKTGAVGKALDESNKTV
AKENQTSKQLQENSDNSSRTKKVLSASKAMLLQKCENVPVKIQELREGKRVKFSTDNYVK
TGSVGKVLDESNKAVAKENQTSKQLQESSDNSSRTKNVLCASKAMSLQKCENVPVKIQCA
FCQSSTESEASGKMLHYVNGKPVADYNKGSHVIHSHSNCTEWAPNVYFEKDTAVNLGTEV
ARSKRIKCSCCGIKGASLGCYENSCRKSFHVPCAKMVPQCRWDTENFVLLCPIHSSSKLP
NEVAGSVGQRREKSIPKTGETEVREAEVVVQHGLNTSQAWKSLGSSKKWVLCCSGLTDGE
KEIVSEFTRITGVPVSKTFGTNVTHIIASTDTSGACKRTLKFLLGILDGKWILNIDWIKA
CLQAMEPVAEEQYEVKVDIHGIEDGPLLGRLRVQKKQPKLFNALNFYFFGEFVPSYKGDL
QNLVVAAGGTVLHRKPIKGDLGLSSSDSSMSTFIIYSLDVPDECDPRRKSTICNRRKDEA
RALAGSSGTKFAGHPWLLDSIAACKLQRLT
NT seq
3513 nt
NT seq
+upstream
nt +downstream
nt
atggaggcgttagttaatttagagaagatgggtagagagttaaaatgcccaatatgcttg
ggtctattgaaatcagcagtttctctcacctgcaatcatttgttttgcgatttatgtatt
aagaaaactatgaaatcagactctcattgtccggtgtgtaaagttccattcggacgaaga
gaggttcgttcggctccgaatatggataacttggttagtatttataagagcatggaagtt
gcttcaggaatcaatacattagccagtcaaactacagcacatactgatggatcagatgaa
attgtttgtgcacagaataaacctcagtatgctgcccattctgatagtccacaaactcga
ggcaaagcaaagaggaagaggaaattcaaaaggaaaacttcaaaagattgcgatactgct
gacaatgtatctcaaccaagccaagaacctacctttccggcaaagaaaagggttcaggtt
ccacaatgcctcttatctgaaaccccaatgaggtctgagaactttgccgttggaagactt
gatgaaatttctgaagatggacctgggagtagcttatttaaatcgaaagggaagtccttt
tctaatgacaaaggggagcctgcatttgcgcccttcttttggttgagagaagataatcct
gacgatgatgtagagaaaccaagtggtcagctgatgacctctgatgattccaaagatact
ccacgaaaaattcctagcttcagtgatttaaaagattctgatgatgagagccctactaaa
tccatcggaaatggtgaagagaaaaccgaatccaaaattgcatacctttttgacagtgag
atgtttgagtggacacagagaccttgctcccctgagcttttttcaacacctgagaaaact
aaggctggatacaaagaactgaacacaattgaagatgatgaatgcgtggtagcttcctca
actcagggtgcacctactggtgaagctgttgcttcagaaacagtgaaagccgtcaactgt
gagcaagaaaatgagaacatagatgagaaacttgcacctgtaaaagcaaaaagttccaaa
aatcgtaacaaaagtaagaaatccaaaagaaagagcaaaagaaacacggggattgctaaa
gagaagtgtgctaagatttctactgatgaggttcttggagatgtttgcattgatctgggt
gaagtaggtgaggtctcaaatgaatcagttaaatgtgccactaacagcactgctacaaat
gtgaggaacaaaatttgcagtaagaacaagaaggctagattgaacagtttcgatgctaac
aaagtaacagatgaattacatgaagcgattgaagtaaacagtgagaatcatgctactaag
gaaactgctaccagatcgcctacgtcattggatgaccaacatacaaagtcaattcacaaa
aacagtgagaaaataaagaagctcgacattcaactcaaacgaactaatgctagaagtttg
aaagacaaaaccgtagctgctgctgcggtagaggtggtagaagaagttcaaaagaatgaa
aaccaagagaatggcaaagcaaacacgaaatcccttgctcagactgacctacaagttgat
cctcctaggacgtctgaattggaggagagagctagaaacaagcccaggaacgccaaaatc
ttaggcaagagaaattgtgctagagaatttggaaatcagaaaagattgaatttcactgat
gatagtgtgaaaggtgtatctgctggtgaagttgcagttgcttctagcaaggttgttgat
ccttcaaaaacatccgagttggagaagagaaccactgacaaacacagggacaccaaaatt
gtaggtgacaagagctgcatgcaagagttgagagaagggaagagagtgaagttttctact
gataattgtgtgaagacaggagctgtggggaaagctctggatgagtctaacaaaactgtt
gcgaaggaaaatcaaaccagtaaacaattgcaggagaattctgataattcaagcagaact
aaaaaagtcctttctgcgtctaaggctatgttactacagaaatgtgagaatgttcctgtt
aaaatccaagagttgagagaagggaagagagtgaagttttctactgataattatgtgaag
acaggatctgtggggaaagttctggatgagtctaacaaagctgttgcgaaggaaaatcaa
accagtaaacaattgcaggagagttctgataattcaagcagaactaaaaatgtcctttgt
gcgtctaaggctatgtcactacagaaatgtgagaatgttcctgttaaaatccagtgtgca
ttttgccaatcatctactgagtcagaggcttcagggaagatgttgcactatgttaatggc
aagccagtagctgattacaacaaggggtctcacgtcatacactcccactcaaattgcact
gaatgggcgccaaatgtatactttgaaaaagatactgcagtcaatcttggaactgaagta
gcaagaagcaaaaggattaagtgtagttgctgtggaatcaaaggggcatctcttgggtgc
tacgagaatagctgtcgcaagagctttcatgttccttgcgcaaagatggttcctcagtgt
cgatgggatactgagaactttgtgctgctatgccctattcattcatcttccaaattgcct
aacgaagtcgcaggatccgtaggtcaaagaagagagaaatccattccaaaaacaggagaa
actgaagttcgagaagcggaagtggtggttcagcatggtcttaatactagccaagcatgg
aaaagtcttggctcctcaaaaaagtgggttctttgttgctcaggtctcacagatggagag
aaggaaattgtttctgagttcacaaggattaccggtgttccagtatcaaagacttttggc
actaatgttactcatatcattgcttcaactgatacgagtggagcatgcaaaagaacccta
aaattcttgctgggcatcttagatgggaaatggatactgaatattgattggattaaagct
tgcttacaagccatggagcctgttgctgaggagcaatatgaagtcaaagttgatatccat
ggaatcgaggacgggcctctactaggaagactacgagtccagaaaaagcaaccaaagctt
ttcaacgcgttgaacttctacttctttggagaatttgtgccttcttacaaaggagacctt
caaaatcttgttgttgctgctggaggaactgttttacacaggaaacccatcaagggagac
ctaggcttatcatcgtctgattcatctatgtcgaccttcataatttacagccttgacgta
cctgatgagtgcgaccccaggagaaagagtacgatctgtaatcgcaggaaggatgaagct
cgtgctttggcaggctccagtggaacaaaatttgctggccatccatggttgttggattcc
attgctgcatgcaagttgcagcgtctaacttaa
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