Papaver somniferum (opium poppy): 113288856
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Entry
113288856 CDS
T05758
Name
(RefSeq) protein ANTHESIS POMOTING FACTOR 1-like isoform X1
KO
K14962
COMPASS component SWD2
Organism
psom
Papaver somniferum (opium poppy)
Pathway
psom03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
psom00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
113288856
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psom03019
]
113288856
03036 Chromosome and associated proteins [BR:
psom03036
]
113288856
Messenger RNA biogenesis [BR:
psom03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
113288856
Chromosome and associated proteins [BR:
psom03036
]
Eukaryotic type
Histone modification proteins
HMT complexes
COMPASS/SET1 complex
113288856
COMPASS/SET1 complex (yeast)
113288856
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_WDR5
Beta-prop_THOC3
Beta-prop_IFT122_1st
Beta-prop_WDR3_1st
WD40_Prp19
WD40_WDHD1_1st
WD40_CDC20-Fz
WD40_Gbeta
WD40
Beta-prop_EML_2
WDR55
EIF3I
Beta-prop_WDR3_2nd
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_WDR36-Utp21_2nd
ANAPC4_WD40
Beta-prop_WDR90_POC16_2nd
NBCH_WD40
Beta-prop_WDR36-Utp21_1st
Beta-prop_EML
Beta-prop_TEP1_C
WD40_MABP1-WDR62_1st
WD40_MABP1-WDR62_2nd
Beta-prop_VPS8
PAC11
Beta-prop_Aladin
Beta-prop_SPT8
Beta-prop_NOL10_N
Beta-prop_SCAP
Beta-prop_WDR75_1st
DSE1_N
Beta-prop_DCAF12
TRM82_WD
Beta-prop_WDR19_1st
VPS11_N
POLO_box
ADYC
Motif
Other DBs
NCBI-GeneID:
113288856
NCBI-ProteinID:
XP_026393765
LinkDB
All DBs
Position
6:complement(111079698..111085499)
Genome browser
AA seq
340 aa
AA seq
DB search
MMPGGGGAGGVQSEKEEKVSMELTEEILKSMEVGLAFRDYNGRISSMDFHKGSNCLVTAS
DDESIRLYDVANAMCLKTINSKKYGVDLVCFASNATTVLYSSKNGWDESLRLLNLNDNKY
LRYFKGHHDRVVSLNFCSRKELFISGSLDRTVILWDQRAEKCQTALLHVQGRPAVAYDDQ
GIVFSVAFGGYIRMFDARMYDKGPFDIFSVGGDISDAFVVKFSNDGTRMLLTTTGGHIHV
LDSFRGTLLSTYNVKPVSSNSTLEASFSPDGAFVVSGSGHGSVYAWSVRTGKEVASWLST
EVEPPVIKWVPGSLMFATGSSELSFWIPDLSKLGCYVGAK
NT seq
1023 nt
NT seq
+upstream
nt +downstream
nt
atgatgccaggaggaggaggagccggaggtgtacaatctgagaaagaagagaaagtttca
atggagttaactgaagaaattttaaagagtatggaagttggtttggcttttagagattat
aatgggagaattagttcgatggattttcataaaggatcaaattgtctggtgacagctagt
gacgatgaatccattcgcctttatgatgttgctaatgccatgtgtttgaagaccattaat
agcaaaaaatatggtgttgatctcgtatgctttgcttcaaatgccacaacagttctatac
tcctccaaaaatggctgggatgaatccttgcgacttcttaacttgaatgataacaagtac
ttgcgttacttcaaaggccatcatgacagggttgtgtcacttaacttctgctcacggaag
gaattattcatttctggttctcttgatagaactgttatactttgggatcagcgggccgag
aagtgccagacggctcttttacatgtgcaaggaaggcctgctgttgcttatgatgatcaa
ggcattgtcttttctgttgcctttgggggatacataagaatgtttgatgcgcgcatgtat
gataagggtccttttgacattttctcagttgggggcgatatatctgatgccttcgttgtc
aaatttagtaatgatggaacacgtatgcttctgaccacaacaggcgggcatattcatgta
cttgactcattccgtggcacacttctatccacgtacaatgtcaagccagtttcaagcaat
tccactttagaagcatctttcagtcctgatggagcgttcgttgtatcaggttcagggcac
ggcagtgtatatgcatggagtgtcagaactggaaaagaagttgctagttggttgagtact
gaagttgaacctccggtaataaaatgggttccaggaagcctaatgtttgctactggatct
tctgaactatcattctggattccagacttatcgaaattggggtgttatgttggagcaaaa
tag
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integrated database retrieval system
