Papaver somniferum (opium poppy): 113289708
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Entry
113289708 CDS
T05758
Name
(RefSeq) tetratricopeptide repeat protein SKI3-like
KO
K12600
superkiller protein 3
Organism
psom
Papaver somniferum (opium poppy)
Pathway
psom03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psom00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
113289708
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psom03019
]
113289708
Messenger RNA biogenesis [BR:
psom03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
113289708
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_2
TPR_1
TPR_17
TPR_11
TPR_8
TPR_16
TPR_14
TPR_19
TPR_9
TPR_CcmH_CycH
TPR_12
TPR_6
TPR_10
NatA_aux_su
TPR_MalT
BTAD
TPR_NPHP3
Motif
Other DBs
NCBI-GeneID:
113289708
NCBI-ProteinID:
XP_026394836
LinkDB
All DBs
Position
6:146285497..146294218
Genome browser
AA seq
1184 aa
AA seq
DB search
MKSEDNEEEGLLLLKQLQEFVDSDPTNASHHYNLALFILENKQEEEDKAKAVEHLVISAK
LNPNNGSAFRLLGHYYSRFSIKDTSRASKCYQRSLTLNPDDFEAGEALCDLLSDDGKETL
EVAVCRDASEKSPRAFWAYGRLGYLLAHQKKWTEAVQSLQQAIRGYPTCADLWETLGLAY
QRLGMLTAAIKSYGRAIELEDTKIFALVESGNILLMLGSFRKGIEQFRQALDIAPHSVAA
HCGLASGMLGLAKECVNSGAFAWGASLLQEASDIAKASTGLSGNASCTWKLHGDIQLTLA
KCFPWMDGKMCIDYDEVAFRKSITSWKRSLYLAAVSASRSYQRALHLTPWKANIYADIAI
SMDLIRSMEERNEPKPFAWQLPEKMSLGALYLEGDSSDFWVIFGCLSTHSPMKQHALIRG
LQLDASLATAWADLGKLYRKVGEKQLTAQAFDHARSIDPALALPWAGISTEFGSGGCTLD
EAYESCLRAVQILPLAEFQIGLGNIAFLSRHLQSPQVFGAVCQAVHRAPHCPESHNLNGL
VHEARYDYQSAIACYRLARYAVNCSVRKTPESHLSDISANLARAYYMAGNAVDSSRECEG
LKKEGLLDIRALQIHALSLWKLGKNELALSVVRILAASISKMDSDTASASICLVCKLMYH
ISGLESASSSILKMPRELLKSSSMSFIVFVIHVLDHSNRLESVIPIGRESLTSDEEIAEM
HSLIALSKVVKTGLEQITDIQKGVHHLRKALHRYPHSSLLRNQLGYVLLSSKEWNDVHTV
PRCTVVESPGFHVVDGLVSAPEILGAAVVACNSSKSTNLKLSLATCIGPCMHGRQTISQL
QRWLHQEPWNHTARYLLLLNFLQKAREERFPQHLCIILSRLVCVALSCEMYSKKDVAYQY
QKFQLLLCASEISLQNGAHDDCIGHALDSLRLTLPDSTRFFAHLVLCRAYAALEDFPKSQ
KEYMKCLELKTEHPVGLISLKLLESRFNLHIDTSTVNLKFEECLKEIGSSRNMWMAVFQL
VLGQSYIWDQDLLHAEEALAQGCSLVDTDSCLFLCHGVICMELAKQQSGSQFLSLSVSSL
RRAQEVSPIPLPIVSALLAQAEASLGSRGEWERNLRLEWFSWPSDTRPAELYFQMHLLAR
QLKGGPDSSLGVGFHRTPQTWILRAIHVNPSCSRYWKLLYKTKV
NT seq
3555 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagcgaagataacgaagaagaaggtcttttattattgaagcaattacaagaattc
gttgattctgatcccaccaatgcatctcatcactacaatctcgcactattcatattggag
aacaaacaagaagaagaagacaaagcaaaagccgttgaacatttggttatctctgctaag
ttaaaccctaataatggttctgcatttcgattgttagggcattattatagtagattctct
atcaaagatacttcaagagcttctaagtgttaccaaagatcactcactcttaatcctgat
gattttgaagctggggaagcactttgtgatttgttaagtgatgatggaaaggaaacattg
gaggttgccgtttgtcgggatgcttcagagaagtcaccaagggccttttgggcgtatgga
cgattaggatatttgctggctcatcagaaaaaatggactgaagcagtacagagtcttcag
caggctatacgaggttatcctacttgtgcagatttgtgggaaactcttggtcttgcatac
cagcggctaggaatgttaactgctgctataaagtcatatgggcgagcaattgagctggag
gatacaaaaatcttcgcgctggttgaaagtggaaacatattgttgatgcttggctccttc
agaaagggcattgagcagtttcggcaggcattagatattgcacctcatagtgtagctgca
cactgtgggcttgcttcggggatgctagggttggccaaggaatgtgtaaattctggtgca
ttcgcttggggagcatcactattgcaggaagcatctgatattgcaaaagcaagtactggc
ttatctggaaatgcttcttgtacgtggaagttgcatggtgatattcagcttacacttgca
aagtgttttccttggatggatggaaagatgtgcatagattatgatgaggtggcattcaga
aaatccatcacttcctggaaaagaagtttgtatctggctgcagtttctgctagtcgttct
taccagcgagcattgcacttgaccccatggaaagctaatatctatgctgatattgcaatc
tctatggatttgattcgttcaatggaggagagaaatgaacctaaaccctttgcttggcag
ctacctgagaaaatgtcgttgggtgccttatatcttgagggagacagtagtgacttctgg
gtgattttcgggtgtttatccactcattctccaatgaagcaacatgctctgattaggggg
ttgcaattggatgcatctcttgcaaccgcatgggcagaccttgggaagctgtacaggaaa
gtgggagagaaacaattgactgcacaagccttcgaccatgctagaagcatagatcctgca
cttgcattaccatgggcaggcatttcaacagagtttggatccgggggatgcactctagat
gaggcttatgaaagctgccttcgggctgtgcagatattgcctcttgcggagttccaaatt
ggtcttggaaatattgcttttctttcaaggcatctgcaatccccacaggtatttggagcc
gtttgccaggccgtgcatcgtgctcctcactgtcctgaatcacacaatttgaatggtctc
gtacatgaagcgagatatgattaccaatcagcaatcgcttgttacagattagcacgatat
gccgttaattgttctgtaagaaagacgcccgaatcccatctctctgatatttcagctaat
ctagccagagcgtattatatggcagggaatgctgttgattcttctcgcgaatgtgaaggt
ttgaagaaagaaggtcttcttgatatcagggcactgcagatacatgctctctctttgtgg
aaacttgggaagaatgagttagctctctctgtggttagaattcttgctgcaagcatttca
aagatggatagtgatactgcttctgcttctatatgtttggtatgtaagttgatgtaccac
atatcagggctcgaatcagcttcatcaagtattctgaaaatgccaagggaactgttaaaa
agttcaagtatgagttttatcgtatttgtgattcatgttctcgaccatagtaatcgtctt
gagtcggtcattccaattggtcgtgaatctctgacatctgatgaagaaatagctgaaatg
cattctttaattgcccttagtaaagttgtcaaaactggactagagcagatcaccgatatt
cagaaaggtgtacatcacctgagaaaagctcttcacagataccctcatagtagtttgtta
aggaaccaactgggttatgttttactatccagcaaagaatggaatgatgttcatactgtg
ccaaggtgcactgttgtagagtctccgggtttccatgtggttgatggtctagtatcagca
cctgagattcttggtgctgcagttgttgcatgcaactccagcaaaagcaccaatttgaaa
ttatctttggcaacatgtataggcccctgcatgcatgggagacaaacaattagtcaactt
cagagatggttgcatcaggagccttggaaccatactgcacgatacttgcttctacttaat
tttctgcagaaggctcgtgaagagcggtttcctcagcatctttgtattatacttagtagg
ctagtttgtgtagctctctcttgtgaaatgtattcaaagaaagatgtagcttaccagtat
caaaagttccagcttctactctgtgcttctgagatcagtttacaaaatggagcgcacgac
gactgcattggccatgctctggattcgttaagacttacgctccctgatagcacccgcttt
tttgcgcacttggtactatgccgcgcctatgcggcattggaggattttccgaaatctcag
aaagagtatatgaaatgcttggagctaaagacagaacatccagttggtttgataagcctc
aaacttctggagtccagatttaacctacatattgatacgagtaccgtgaacttgaaattc
gaggagtgcttgaaagaaatcggaagctcaagaaatatgtggatggcagtgtttcagtta
gtgttgggtcagagctatatttgggatcaagatctgcttcatgcagaagaggctcttgca
cagggttgctcattggttgataccgatagttgcctctttctctgtcatggggttatctgt
atggagcttgctaagcaacagtctggatctcagttcttgtctctctcagtttccagcctg
cgcagagctcaagaggtatcacccattcctttacctattgtctcagcattgcttgctcaa
gcagaagcaagccttggctccagaggggagtgggagagaaaccttcgactcgaatggttt
tcttggccatcagacacgaggcctgcagaattgtactttcaaatgcacttgctcgcacga
cagctgaaaggtggtcctgactcatctcttggtgttggttttcatcggacccctcagaca
tggattctgcgagcgatacatgtgaacccatcctgttccagatattggaaattgttgtac
aagacgaaggtttga
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integrated database retrieval system
