Papaver somniferum (opium poppy): 113289719
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Entry
113289719 CDS
T05758
Name
(RefSeq) general transcription factor IIH subunit 2-like
KO
K03142
transcription initiation factor TFIIH subunit 2
Organism
psom
Papaver somniferum (opium poppy)
Pathway
psom03022
Basal transcription factors
psom03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
psom00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
113289719
09124 Replication and repair
03420 Nucleotide excision repair
113289719
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
psom03021
]
113289719
03400 DNA repair and recombination proteins [BR:
psom03400
]
113289719
Transcription machinery [BR:
psom03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
113289719
DNA repair and recombination proteins [BR:
psom03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
113289719
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ssl1
C1_4
VWA_2
IBR
VWA
Tfb4
Motif
Other DBs
NCBI-GeneID:
113289719
NCBI-ProteinID:
XP_026394856
LinkDB
All DBs
Position
6:complement(146820746..146827048)
Genome browser
AA seq
427 aa
AA seq
DB search
MNYFTNNHVEERRVAEEKEDEEDEEGNENDMEAWERAYAEDRSWESLQEDESGLLRPIDN
DGVQHAQYRRRLRNLSAASAASRIQKGLIRYLYIVIDLSRAASERDFKPSRMAVVAKHVE
AFIREFFDQNPLSHIGLVTIKDGVAQCLTDLGGSPDSHIKTLMGQLSCSGDSSLQNALDL
VEGYLCGIPSYGHREVLLLYSALTTCDPGDVMETIKKCKRSKIRCSVIGLSAEVFVCKHL
CQETGGSYTIALNEFHFKDLLLEHAPPPPAIAEFAVGNLIKMGFPQRAAEGVVSICSCHK
EAKVGGGYICPRCKARVCELPTECRICGLTLVSSPHLARSYHHLFPITPFEEPSLGLLNS
SRHKLPKTCFGCQQSLVPSGNRPGLRVACPKCKQHFCLDCDIYIHESLHNCPGCESLRHS
KTVNNIE
NT seq
1284 nt
NT seq
+upstream
nt +downstream
nt
atgaattactttacgaacaatcatgtggaagagcgacgagtagctgaagaaaaggaagat
gaggaggatgaagagggaaatgagaatgatatggaggcttgggagagagcttatgcagag
gacagatcatgggagtctctgcaagaagatgagtctggactcctccgtccaatcgataac
gatggtgtacaacatgcccagtaccgtcgccgcctaaggaacctctctgctgcgtctgca
gcctctaggatccagaaaggtctcatacgctacctatacattgtcattgatctctctagg
gcagcttcagagagggattttaagccaagccggatggcagtggttgccaaacacgtcgaa
gctttcattagagagttctttgatcagaaccctcttagtcatattggtctagttactatt
aaggatggggtagctcagtgcttaactgaccttggtggaagtcctgattcccatataaag
actttgatgggtcagttgagctgttcgggtgattcctcccttcagaatgccctagatctt
gttgaaggctatctctgcggaattccctcgtatggtcaccgtgaagtcttattattatat
tctgctcttacgacatgtgatcctggggatgtaatggagaccatcaaaaaatgcaagagg
tctaaaattaggtgctcagttattggcctttcggcagaagtttttgtatgtaaacatctt
tgccaagagactggagggtcctacaccatcgcgttgaatgaatttcattttaaggacttg
ttactggagcatgctcctccaccaccagcaatagcagaatttgctgttgggaatttaatc
aagatggggttcccacaaagagcagcagagggtgttgtctctatctgttcgtgccacaag
gaagctaaggttggtgggggttacatttgtccaagatgcaaagcacgtgtctgtgaactg
cctacagaatgccgaatttgtgggctgacacttgtttcttcacctcatttggcaagatca
tatcatcatttattcccgataactccttttgaggagccgtcactcgggcttctcaatagt
tcacgtcacaagttaccgaaaacttgttttggttgccaacaaagccttgtaccttctggt
aacaggcccggcctccgtgttgcttgccccaagtgtaaacaacatttctgcttggactgt
gacatttacatacatgagagcttgcacaattgtccaggttgcgagagtcttagacattcc
aaaaccgttaacaatattgaatga
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