Papaver somniferum (opium poppy): 113290038
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Entry
113290038 CDS
T05758
Name
(RefSeq) putative transcription elongation factor SPT5 homolog 1 isoform X1
KO
K15172
transcription elongation factor SPT5
Organism
psom
Papaver somniferum (opium poppy)
Pathway
psom03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
psom00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
113290038
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
psom03021
]
113290038
03019 Messenger RNA biogenesis [BR:
psom03019
]
113290038
Transcription machinery [BR:
psom03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
113290038
RNA polymerase I system
113290038
Messenger RNA biogenesis [BR:
psom03019
]
Eukaryotic type
mRNA processing factors
3' end processing
DRB sensitivity inducing factor (DSIF) complex
113290038
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
KOW1_SPT5
KOW4_SPT5
KOW2_Spt5
Spt5-NGN
KOWx_SPT5
KOW5_SPT5
KOW
Spt5_N
KOW7_SPT5
Myosin_N
DUF150_C
Motif
Other DBs
NCBI-GeneID:
113290038
NCBI-ProteinID:
XP_026395301
LinkDB
All DBs
Position
6:166970679..166977622
Genome browser
AA seq
1129 aa
AA seq
DB search
MKMSNKTLAQHRHEEDDSDEDEDEDEEGEFDVAEYERRGFSKSSAGGGGDSSHKLRRLDS
LYDSSADEYDSEDEDEDEDEEREEDEMYSSSGRKRKRHSSNPFIDDQAIVATDDEDDDYE
RGEVDRDFIEPDENIPEEHEATRMQHRRMLPQEDEEVDVDEFERRIRQRYSSQSYLEEGI
DEISDVEQQALLPSIKDPKLWMVKCAMGREREAAVCLMQKRIDRGHREMQIRSVISPHYL
KNYIYVEADKSAHVIEACKGLRILNTTKVMLVPTKEMTDVLLVEGNPIDIAKDMWVRLRI
GIYKGALAKVVNVSDVRQKVMVKLIPRVDLQAIADKLEGRKVSKKAYIPSPRLMKIDEAR
NLNIPVDYRTGRSTNIQFCVIDGKMFKDGFLYKTVSMRSIDYQNIQPTFSELEKFCETGH
GVVGSMSTSPRNRKKSHFMKGDAVIVVKGDLKNLMGWVEKVEEDNVHIRPKVKGLCTTVA
VNEKYVCKSFKPGDHVKVVFGAHKGVTGMVIKVNSNVLIILSDATKEDIRVFAEHAVDSS
EVTTGVTKVGDYELHDLVMLDNTCFGVIIRLESQTLQILLGDPDRPDVARVKMREIKYKI
QRRNTALDQSNNTVSVKDVVKILMGPCKGKQGPVEHIFRGTLFINDRHHMEHSGFICVRA
QSCIVMGGSPAKVSLSSKFGSSTDAARVAPSPRRFPSGGPPFDSGGRQKSGQRGHDSFVG
RTIKIHIGHYKGCRGRVVSVKGQSVRVELESQMKTVLVNRDEISAIPDVSTSLSEPPQHG
LGSETPIHRAQTPTHSYATPTRNEGGTPRHSGTWTPLRDQAWNPEATTTPSGEKWEDGNP
GSWGTIPPTQTTPLGRSNKAPSAGSDWGNWGDGDCGSRGTVPPAQPATPLARSNEAPSTG
TGWGNWGDGNRGSPGTIPPAQQTTSLARSNEAPSAGSDWGNWGDGNRGSRGTVPPAQQAT
SLARSNEAPSTGTGWGSWGDGNRGSPGTIPPAQQATPLARSNEAPSTGSSWGTWGDGNPG
SRGTIPPAQQAPPLSRSNEAPGTGSGWGNWGNGNPGSRGTVPPAQQAPPLSRSNEAPSTS
SGLGNWGDGSSPQCGQGTPRAHSNEAPALAQSTGSGWGGKNGSQGSLKW
NT seq
3390 nt
NT seq
+upstream
nt +downstream
nt
atgaaaatgtcaaataaaaccctagctcagcatcgccatgaggaagatgatagtgatgaa
gacgaagacgaagacgaagaaggagagtttgatgttgctgagtatgagagaagaggtttt
agtaaaagtagtgctggtggtggtggtgattccagtcacaaactaaggagattagattct
ctatatgatagtagtgcagatgagtatgatagtgaggatgaagacgaagatgaagacgaa
gagagagaggaagatgaaatgtattcctcctctggtagaaagcggaagagacatagttct
aatccttttattgatgatcaagctattgttgctactgatgatgaagatgatgattatgaa
agaggagaagttgatcgtgatttcatagagcctgatgaaaacataccggaagaacatgag
gccacaaggatgcaacatcgccgtatgttacctcaagaggatgaagaagtagatgttgat
gaatttgagagaagaattcgccaacggtattccagtcaatcctacttagaagaaggtatt
gatgaaattagtgacgttgagcagcaagctcttttgccatcaattaaggatccaaagttg
tggatggtgaaatgcgcaatgggtcgtgagcgagaggcagctgtttgccttatgcagaaa
cgtattgatcgaggtcatcgtgaaatgcagataagatctgtcatctctcctcattatctt
aagaactatatttacgttgaggctgataagtcagcccatgtgatagaggcttgcaaaggt
ctcaggatcttaaatactacaaaagtaatgcttgttccgacaaaagaaatgacagatgtg
cttttagtagaaggcaatcccatagatattgcaaaggatatgtgggtgcgactgaggata
gggatatataaaggggctcttgcaaaagttgttaatgtgtctgatgtacgacaaaaggtt
atggttaagctaatcccacgggttgatttgcaagccattgctgataaactggaaggtagg
aaagtctcgaaaaaggcatatataccctctccacgcctcatgaaaatagatgaagcaagg
aaccttaatataccagtcgactatagaacgggacgaagcactaatattcaattctgtgta
attgatggaaagatgtttaaagacggtttcctatataaaactgtatcaatgagatcaata
gattatcaaaacattcaaccaacctttagtgagcttgagaaattttgtgagactgggcat
ggagttgtgggtagtatgtccacttcacctagaaacaggaaaaaaagccactttatgaag
ggtgatgctgtcattgttgttaaaggagatctcaaaaatctgatgggatgggttgaaaaa
gttgaggaagataacgtccatattaggccaaaagtgaagggcctgtgcacaacagttgct
gtgaatgaaaaatatgtttgcaaatccttcaagcccggggatcatgtgaaggttgtcttt
ggtgctcacaagggtgtaaccggtatggttattaaggttaacagtaatgtactcatcatt
ctatctgacgcaactaaagaagacatccgtgtctttgctgaacatgctgtggacagctct
gaagtaactactggggttaccaaagttggggattatgagttgcatgaccttgtcatgctt
gataacacgtgctttggagtaataatacgtttagagagtcaaacactccagatactgctg
ggagatccagatagacctgatgttgcacgagtgaagatgagggagatcaaatacaagatt
cagaggaggaatactgctctagatcaatcgaacaatactgtgtctgtgaaagatgttgtg
aagattctaatgggcccttgcaaaggaaaacaaggtcctgtagaacacatatttagagga
acattgttcataaatgaccgccatcacatggagcattctggttttatctgtgtgagagca
caatcttgtatagtgatgggtggctcacctgccaaggtttccctgtcctcgaaatttgga
agttctacagatgcagctcgcgtcgccccttcaccaagaagatttcctagtggaggacct
ccatttgactctggaggaagacagaagagtggacagcgagggcatgattcttttgttggt
agaaccataaaaattcatattggtcactataagggatgtcgcggtcgtgttgtaagtgtt
aagggacaatcagttcgagttgaactggaatctcaaatgaaaactgtactagttaaccgt
gacgagatatctgctatcccagatgtttctacttcattaagtgaaccacctcaacatggt
ttaggaagtgagacacctatacatcgcgcacaaactccgacacactcatatgccactcct
acgagaaatgaaggaggaacaccaagacatagtggtacctggactcccctgcgtgatcaa
gcttggaatcctgaagctaccacaactccatccggggaaaaatgggaagatggaaatcct
ggctcgtggggaaccattccaccaactcaaacaactcctcttggacgttcaaataaagca
ccaagcgcaggttctgattggggcaactggggagatggagattgtggctcgcggggaact
gttccaccagctcaaccggcaactcctctcgcacgttcaaatgaagcaccaagcacaggt
accggttggggcaactggggagatggaaatcgtggttcgccgggaaccattccaccagct
caacagacaacttctcttgcacgttcaaatgaagcaccaagcgcaggttctgattggggc
aactggggagatggaaatcgtggctcgcggggaactgttccaccagctcaacaggcaact
tctcttgcacgttcaaatgaagcaccaagcacaggtaccggttggggcagctggggagat
ggaaatcgtggctcgccgggaaccattccaccagctcaacaggcaactcctcttgcacgt
tcaaatgaagcaccaagcacaggttccagttggggcacctggggagatggaaatcctggc
tcgcggggaaccattccaccagctcaacaggcaccccctctttcacgttcaaatgaagca
ccaggcacaggttccggttggggcaactggggaaatggaaatcctggctcgcggggaacc
gttccaccagctcaacaggcacctcctctttcacgttcaaatgaagcaccaagcacaagt
tccggtttgggcaactggggagatggaagcagtccacaatgcggccagggaactcctcga
gcgcattcaaatgaagcaccagcactagcacagagcaccggttcaggctggggaggtaaa
aatggttctcagggaagccttaaatggtga
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