Papaver somniferum (opium poppy): 113291597
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Entry
113291597 CDS
T05758
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH9-like
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
psom
Papaver somniferum (opium poppy)
Pathway
psom03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psom00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
113291597
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psom03019
]
113291597
03041 Spliceosome [BR:
psom03041
]
113291597
03009 Ribosome biogenesis [BR:
psom03009
]
113291597
03016 Transfer RNA biogenesis [BR:
psom03016
]
113291597
Enzymes [BR:
psom01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
113291597
Messenger RNA biogenesis [BR:
psom03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
113291597
Spliceosome [BR:
psom03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
113291597
Complex C
U4/U6.U5 tri-SnRNP related factors
113291597
Ribosome biogenesis [BR:
psom03009
]
Eukaryotic type
Pre-60S particles
Helicases
113291597
Transfer RNA biogenesis [BR:
psom03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
113291597
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
PK_Tyr_Ser-Thr
Pkinase
DEXQc_Suv3
ResIII
ATPase_2
Motif
Other DBs
NCBI-GeneID:
113291597
NCBI-ProteinID:
XP_026396901
LinkDB
All DBs
Position
6:complement(142690660..142700448)
Genome browser
AA seq
563 aa
AA seq
DB search
MGSLKRKPEGNHWVEELSDAQKKQKSLIGEDISAVAACIHEVSYPKGYTPPLRRCNNSNR
KPAKEYPFSLDSFQSEAIKCSDKGESVMVSAHTSDGKTVVAQYAIAMSLRDKQRVIYTAP
IKALSNQKYREFKEEFSDVGLMTGDVTIEPNASCLVMTTEIWRSMQYKGSEIMREVAWVI
FDEVRYMRDRERGVVWEESIVMAPKNSRFVFLSATVPNAKEFADWVAKVHRQPCHVVYTD
YRPTPLQHYVFPSGGEGLYLVVDEKGKFLEDNFQKALNAVPLDGEGDNKNKRIGKWQKGL
VACKSGEKSDIYKLVKMIIKRRYDPVIVFSFSKRECESLAMMMAKINLSIDVEQENIEEI
FWNAMDLLSDDDKKLPQMSCFSCIISPSDKRDIGKIQDNSRLRRSNSSRHSTSNSSESGQ
GRLSLDSNEIVKRRATFNGRDKERSIPSGTTARSFTFRELVSATKNFKITHLIGEGGFGK
VYKGCIETGEIVAVKQLAKNSLQGNQEFIVEVLMLSLLHHPNLVNLIGYCTDGDQRLLVY
EYMAMGSLQDHLFDLSSDEDALD
NT seq
1692 nt
NT seq
+upstream
nt +downstream
nt
atgggatccttgaagaggaaaccagaaggaaatcattgggtagaagaactcagtgatgca
caaaagaaacagaaatctctaattggcgaagatatttcggcagtagcagcttgtattcac
gaggtatcgtatcctaaaggatatacgcctcctcttcgtcgttgtaataattctaatagg
aaaccagcaaaggaatatccatttagtcttgattcatttcaatcagaagcaattaaatgc
tcagataagggagaatcagtgatggtatcagctcatacttcagatggtaaaactgttgta
gctcagtatgcaattgctatgtctttgagagataaacaacgtgttatttatactgctcca
attaaagctcttagtaatcagaagtatagggaattcaaagaagaattctctgatgttggc
ctaatgactggagatgtaactattgaacctaatgcttcttgcttggttatgacaactgaa
atttggcgtagcatgcaatataagggatcagagattatgagggaagtggcatgggtaata
tttgacgaagtacgttatatgcgagatagagaaagaggtgttgtttgggaagagagtatt
gtaatggcacccaagaattcccgctttgtgtttctctctgcaactgtgcctaatgccaag
gagtttgcggattgggttgcaaaggttcatcgacaaccatgccatgttgtttacacagat
tatcgtcctacaccacttcagcattatgtgtttccttctggaggggagggtttatatttg
gttgtggatgagaagggtaaatttctggaagataacttccagaaagccttaaatgcagtt
cctcttgatggtgaaggagacaataaaaataagagaattgggaaatggcagaaaggttta
gtggcatgtaaatcaggcgaaaagagtgatatctataagttggtgaagatgataattaag
cgccgatatgatcctgttatagttttcagttttagcaaaagggagtgtgaatctctcgct
atgatgatggctaagataaacctgagtatcgatgttgagcaagaaaatatagaagagatt
ttctggaatgcaatggacttactgtcggatgatgacaaaaagcttcctcagatgagttgt
ttttcttgcataatttctccttctgataaaagggacattggtaagatacaggacaattca
cggcttcggagatcaaatagttctcgccattccaccagtaattcttcagaaagcgggcaa
ggtagattatctttagacagtaatgaaattgttaagagaagagccaccttcaatgggaga
gacaaggaacggagcattccaagtggcactactgcacgtagctttacattccgcgaactt
gtttctgcaaccaaaaattttaagatcactcatttgataggtgaaggtggttttggaaag
gtttacaaaggatgcattgaaaccggcgagattgtcgctgtcaaacaacttgctaagaac
agccttcaggggaaccaggaatttatcgttgaggttctgatgctaagtcttctacaccat
cccaatctcgtaaatttgataggctattgcactgatggagatcaaaggctcttggtttat
gaatacatggcaatggggagtctacaagatcatttgttcgatttaagctctgacgaggat
gcattagactag
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