Papaver somniferum (opium poppy): 113295025
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Entry
113295025 CDS
T05758
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 56-like
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
psom
Papaver somniferum (opium poppy)
Pathway
psom03013
Nucleocytoplasmic transport
psom03015
mRNA surveillance pathway
psom03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
psom00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
113295025
09122 Translation
03013 Nucleocytoplasmic transport
113295025
03015 mRNA surveillance pathway
113295025
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psom03019
]
113295025
03041 Spliceosome [BR:
psom03041
]
113295025
Enzymes [BR:
psom01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
113295025
Messenger RNA biogenesis [BR:
psom03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
113295025
Spliceosome [BR:
psom03041
]
Complex C
Other components
EJC/TREX
113295025
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
113295025
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
YihI
Motif
Other DBs
NCBI-GeneID:
113295025
NCBI-ProteinID:
XP_026399171
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All DBs
Position
7:6942444..6946793
Genome browser
AA seq
428 aa
AA seq
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MGETKEIDTYEEELLDYEEEEEKVPDSNGAKATGEVAKKGYVGIHSSGFRDFLLKPELLR
AIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPVAGQVAALI
LCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKTHKELLKNECPHVVVGTPGRILA
LAREKDLALKNVRHFILDECDKMLESLDMRKDVQEIFKMTPHDKQVMMFSATLSKEIRPV
CKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLTELEKNRKLNDLLDALDFNQVVIFVKSVS
RAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGHKRILVATDLVGRGIDIERVNI
VINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDVLNQVQERFEVDIKELPEQI
DTSTYMPS
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atgggagaaacaaaagagatcgatacgtacgaggaggagcttcttgattatgaagaggaa
gaagagaaagtaccagattctaatggtgctaaagctactggcgaagttgccaaaaagggt
tatgttggaatacacagttctggattcagagattttctattaaagccggagcttcttaga
gcaattgttgattcgggatttgagcatccatctgaagttcaacacgaatgcattcctcaa
gctattttgggtatggatgttatctgtcaagcaaagtctgggatgggaaaaactgctgtc
tttgtcctctcgacattgcagcagattgagcctgttgctggacaagttgctgctctaatc
ttgtgtcacactcgagaattggcttaccagatctgccacgagtttgaacggttcagcaca
tacctgcctgatattaaagttgctgtgttctatggtggtgttaacatcaagacccacaag
gaattattgaaaaacgagtgccctcatgttgttgttggtactcctggaaggatactagca
ttggccagggaaaaggaccttgcattgaagaatgttaggcacttcattcttgatgaatgt
gataaaatgctggagtctcttgacatgcgaaaagatgtacaggagattttcaagatgact
cctcatgataagcaagtcatgatgttttcagccacactcagcaaggaaattcgtcctgtc
tgcaagaaatttatgcaagatccaatggaaatctatgttgacgatgaggcgaagttgacc
ctacacgggctcgtgcagcactacataaaattgaccgagctggagaaaaaccgcaaattg
aatgatctactggatgcgttggacttcaatcaagttgtaatttttgtcaaaagtgtgagc
agagcagctgaacttaacaagttactcgtggagtgcaacttcccatcaatttgcatccat
tctggaatgtctcaggaagaaaggttgactcgctacaaaggtttcaaggaggggcataag
aggattcttgtagcaacggatttggttggtagaggaatagacattgaacgcgtcaacatt
gtgatcaactatgatatgcctgattctgctgatacttacttgcatagggttggcagagca
ggtcgatttggtacaaaagggcttgcaattacctttgtctcatctgcttccgactcagat
gttcttaaccaggttcaagagaggtttgaggtagacattaaagagcttccagagcaaatt
gatacttcaacatacatgccctcttaa
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