Papaver somniferum (opium poppy): 113297435
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Entry
113297435 CDS
T05758
Name
(RefSeq) sm-like protein LSM8 isoform X1
KO
K12627
U6 snRNA-associated Sm-like protein LSm8
Organism
psom
Papaver somniferum (opium poppy)
Pathway
psom03018
RNA degradation
psom03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
psom00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
113297435
09123 Folding, sorting and degradation
03018 RNA degradation
113297435
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psom03019
]
113297435
03041 Spliceosome [BR:
psom03041
]
113297435
Messenger RNA biogenesis [BR:
psom03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
113297435
mRNA degradation factors
5'-3' decay
Lsm complex
113297435
Spliceosome [BR:
psom03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
113297435
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
RVT_2
DUF150_C
Motif
Other DBs
NCBI-GeneID:
113297435
NCBI-ProteinID:
XP_026401689
LinkDB
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Position
7:60333071..60335086
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AA seq
98 aa
AA seq
DB search
MSGGPGLESLVDQQISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLG
LYIIRGDNISIVGEVDEELDSNLDMSKLRAHPLKPIIH
NT seq
297 nt
NT seq
+upstream
nt +downstream
nt
atgtcaggtggacctggacttgagtctcttgttgatcagcaaatctcggttataacaaat
gatgggcgaaatatagtgggagttctaaaaggttttgaccaggctaccaatatcattctg
gatgaatctcatgaaagggtttactctacaaaggaaggtgtccaacaacttgtattaggc
ttgtacatcataaggggtgacaacataagtattgttggggaagtagatgaagaactcgac
tccaatctagacatgtcaaaattaagagcacatcctcttaaaccaataattcactga
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