Papaver somniferum (opium poppy): 113297540
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Entry
113297540 CDS
T05758
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 3-I-like
KO
K14403
cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
Organism
psom
Papaver somniferum (opium poppy)
Pathway
psom03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
psom00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
113297540
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
psom03021
]
113297540
03019 Messenger RNA biogenesis [BR:
psom03019
]
113297540
Transcription machinery [BR:
psom03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
113297540
Messenger RNA biogenesis [BR:
psom03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
113297540
U7-dependent histone pre-mRNA processing factors
113297540
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CPSF73-100_C
Beta-Casp
Lactamase_B
Lactamase_B_6
RMMBL
Anti-Pycsar_Apyc1
Lactamase_B_2
Lactamase_B_3
Motif
Other DBs
NCBI-GeneID:
113297540
NCBI-ProteinID:
XP_026401819
LinkDB
All DBs
Position
7:complement(67823635..67827815)
Genome browser
AA seq
704 aa
AA seq
DB search
MAATGDAQSANKSMKRSSSVTREAGDQLIITPLGAGNEVGRSCVYMSYKGKTVLFDCGIH
PAYSGMAALPYFDEIDPSTIDVLLVTHFHLDHAASLPYFLEKTTFKGRVYMTHATKAIYK
LLLSDYVKVSKVSVEDMLFDEQDIIKSMDKIEVIDFHQTLEVNGIRFWCYTAGHVLGAAM
FMVDIAGVRVLYTGDYSREEDRHLRAAETPTFSPDICIIESTYGVQLHQSRIVREKRFTE
VIHSTIAQGGRVLIPAFALGRAQELLLILDEYWSNHPELHNIPIYYASPLAKRCMAVYQT
YINSMNDRIRTQFANSNPFDFKHISPLKSIENFQDVGPSVVMASPGGLQSGLSRQLFDLW
CSDKKNSCVIPGYVVEGTLAKTIINEPKEVTLMNGLTAPLNMQVHYISFSAHADFAQTST
FLKELMPPNIILVHGEANEMGRLKQKLITQFADKNTKIISPKNCQSVEMYFNSEKMAKTI
GKLAEKTPEPGETVSGLLVKKGFTYQIMAPDDLHVFSQLSTANIIQRISVPYTGAFGVIK
HRLKQIYESVESPPDEESEVPSLLVHERVTVKQETEKHVSVQWTSDPISDMVSDSIVALV
LNISREMPKVTTVAETAKTEEETGKTTEKVIHSLLVSLFGNVKIGEQGKLVITVDGNVAH
LGMTTGDVECENESLKERVKTAFRRIHSAMRPIPLSASQTAVSL
NT seq
2115 nt
NT seq
+upstream
nt +downstream
nt
atggctgcaacaggagatgctcaatcagctaataaatcaatgaagagaagttcttcagtg
acgagagaagcaggggatcaactaataattaccccattgggtgctggtaatgaagttggt
cgttcttgtgtttacatgtcttacaaaggaaaaactgttctgtttgattgtggaattcat
ccagcttattcaggaatggctgctttgccttactttgatgagatcgatccttcaaccatt
gatgttcttcttgttacccactttcacttggatcatgcggcgtcacttccatattttcta
gagaagaccaccttcaaaggacgcgtttatatgactcatgcaacaaaggctatctacaag
ttgcttttatcagattatgtgaaagttagcaaggtttcagttgaagatatgttgtttgat
gaacaagacattatcaagtccatggacaaaatagaggttattgacttccaccaaactcta
gaagtgaatggaattcgcttctggtgctacactgctgggcatgtccttggtgctgccatg
ttcatggttgacattgctggagttcgggtactctacacaggggactactcacgcgaggaa
gatcgccaccttcgtgctgccgaaactcctacattctctcctgatatctgcattattgag
tcaacctacggtgtccagctccatcagtcacggattgtacgggaaaaacgattcactgaa
gtaattcactcaacgatcgcccagggtggccgtgtcctcataccagcatttgccctcggt
cgtgcacaggaactgcttcttattcttgatgagtactggtcgaatcaccctgaactccac
aatattccaatatactatgcatcccctcttgccaagagatgcatggctgtgtaccaaacc
tacatcaactctatgaatgacaggatcaggactcagtttgctaactcaaaccccttcgac
ttcaagcacatatcgccattaaagagtattgagaattttcaagatgtgggaccatcagtg
gtgatggcaagtcctgggggtctacagagtggtttatcgagacagttatttgatctgtgg
tgctctgacaagaagaattcttgtgtcatacctgggtatgtagtcgaagggacccttgca
aagaccataatcaacgagcccaaggaggtcaccctcatgaatggtctcactgcgccgctc
aacatgcaagtgcattacatttctttctcagcccatgctgattttgcacaaacaagtacg
ttcctgaaggagttgatgccccctaatattattcttgtccatggagaagcaaacgagatg
ggtaggctcaaacaaaagctcatcacacaatttgctgataaaaacactaaaatcatatct
ccaaagaattgccagtctgttgaaatgtacttcaactctgagaaaatggccaagacaatc
ggaaaactagctgagaaaaccccagaaccaggcgaaacagttagtggcctgctagtaaag
aaagggtttacttatcagataatggctccagatgatcttcatgtattctcacagttatcc
acagcaaatatcattcagaggatttcagtcccttacactggtgccttcggtgtgataaag
cataggctgaagcagatctatgagagtgttgaatcaccaccagatgaagagtccgaggtc
cctagtttgctagtgcatgaaagggttacggtgaagcaggaaacagagaagcatgtttct
gtgcagtggacgtcagatccaatcagtgatatggtctcagattcgattgttgctctggtt
ttgaacataagtagagaaatgccgaaagttacaacagtggctgaaacggctaaaacagag
gaagaaacagggaaaacaacagaaaaggtgattcactctctgttggtatcactatttggc
aatgtcaagattggcgagcaggggaaattggtaattacggtcgatgggaatgtggcccat
cttggtatgacaactggggatgttgaatgtgaaaatgaaagtcttaaagagagggttaag
acagctttccggcggatccatagtgccatgagacccatcccactctctgcatctcagact
gcagtttctctatag
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