Papaver somniferum (opium poppy): 113297597
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Entry
113297597 CDS
T05758
Name
(RefSeq) ERAD-associated E3 ubiquitin-protein ligase HRD1B-like isoform X1
KO
K10601
E3 ubiquitin-protein ligase synoviolin [EC:
2.3.2.27
]
Organism
psom
Papaver somniferum (opium poppy)
Pathway
psom04120
Ubiquitin mediated proteolysis
psom04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
psom00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
113297597
04120 Ubiquitin mediated proteolysis
113297597
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
psom04121
]
113297597
Enzymes [BR:
psom01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
113297597
Ubiquitin system [BR:
psom04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
113297597
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_2
zf-rbx1
zf-C3HC4
zf-C3HC4_2
zf-RING_UBOX
zf-C3HC4_3
zf-ANAPC11
FlxA
zf-RING_16
zf-RING_11
zf-RING_5
zf-C3HC4_4
Motif
Other DBs
NCBI-GeneID:
113297597
NCBI-ProteinID:
XP_026401908
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Position
7:72552064..72558021
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AA seq
550 aa
AA seq
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MMRLQTYAGVSVVGALAVIYHAFSSRGQFYPAMVYLSTSKICLVLLLNMGLVMMCILWQL
TKRLFLGSLREAEVERLNEQSWKEVMEILFAITIFRQDFSVTFLAMVTALLLIKALHWLA
QKRVEYIETTPAVTMLSHFRIVSFMGFLLILDCIFLYSSLQYLIQTWKASVSLFFAFEYM
ILATTTVSTFVKYVFYVSDMLMEGQWERKAVYTFYLELIRDLLHLSMYLCFFLVIFMNYG
VPLHLIRELYETFRNFKVRVADYIRYRKITSNMNDRFPDATPEELNTGDATCIICREEMA
TAKKLICGHLFHVHCLRSWLERQHTCPTCRALVVPPEGGTAASVGQQGARAQVHQQAGIG
GDTSPQGSAGGAANTHLTQHQARIQAAAAATAIYEKSYVYPSANTLAWSTGYAVLPRGST
SSSDSSNTESTGERIISGISGGQTNVTHPQVSQGAFVPLHAFSGVNLKDGYKSGNDLNGY
GSHLEVQERLLKQQIEVLQSQLRQLNHHKSDDTNISNPSPADNKGKGIASSSSESDRNAE
EVKMKREKIQ
NT seq
1653 nt
NT seq
+upstream
nt +downstream
nt
atgatgaggctgcaaacttatgctggggttagtgtggtgggtgctcttgctgtaatatat
cacgcttttagtagtagaggtcaattttatccagccatggtgtacttatcgacctcgaag
atctgtttggtgctacttctgaacatgggtttggtgatgatgtgtattttgtggcagtta
actaaacgtttgtttcttggatcactacgggaagcagaggtggagaggttgaatgaacag
tcatggaaggaagttatggagatacttttcgcaatcactatattcagacaggatttctca
gttacttttctcgctatggttacggctttactgttaattaaggcgttacattggttggct
cagaaaagggtcgagtacatagagacaactccagctgtgacaatgttgtcacacttcagg
attgtttcttttatggggtttcttcttattctggattgtatctttttgtacagttcgtta
cagtatttgatccagacatggaaggcttcagtttctctcttctttgcatttgagtatatg
atactagccacaacaacagtttcaacgtttgtaaaatatgtcttttatgttagtgacatg
cttatggaagggcagtgggagagaaaggcagtctataccttctacctggaacttattcga
gatttacttcacttgtctatgtatctgtgcttctttcttgtgattttcatgaactatgga
gtgccgttacacttgatccgggaattgtacgagacattccgcaacttcaaggttcgtgtc
gctgattatattcggtacaggaaaatcacttcaaatatgaacgatcgtttccctgatgca
acgcccgaagagcttaacacaggtgatgcaacctgcattatttgtcgcgaggagatggct
acagcgaaaaaactcatctgcgggcacctttttcatgtgcattgtcttcgatcttggtta
gaacgacagcatacttgccctacatgtagagctttagttgtcccaccggaaggtggaaca
gctgcatctgtggggcaacagggagcgcgagctcaagtccatcaacaagctggaattggt
ggcgatacatcaccacaaggttctgcaggtggtgcagccaacactcatttgactcagcat
caggctagaatacaagctgctgctgcagctacggcaatatatgagaaatcctatgtttac
ccttctgcaaatacacttgcatggtctactggttatgctgtacttcctcggggttctaca
tcttcgtcagattcttctaatactgaatctaccggagaaagaataatctctggaatttca
ggtggacagacaaatgtcacgcatcctcaggtttctcaaggtgccttcgtccctttgcat
gcatttagtggtgtcaatttgaaggacggctacaagtcaggaaatgacctgaatggatat
ggttctcacttggaggtccaggaaagacttctcaagcagcagattgaggttctacagagc
cagttgcgtcagttaaatcatcataaatcagatgatacaaacataagcaatccatcacca
gctgataacaagggcaaagggattgcatcatcatcttcagagagtgatcgtaatgctgaa
gaggtaaaaatgaagagagaaaagattcaatga
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