Papaver somniferum (opium poppy): 113298093
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Entry
113298093 CDS
T05758
Name
(RefSeq) protein ROOT INITIATION DEFECTIVE 3-like
KO
K14829
pre-rRNA-processing protein IPI3
Organism
psom
Papaver somniferum (opium poppy)
Brite
KEGG Orthology (KO) [BR:
psom00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
psom03009
]
113298093
Ribosome biogenesis [BR:
psom03009
]
Eukaryotic type
Pre-60S particles
5-FMC complex
113298093
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_TEP1_2nd
Beta-prop_EML_2
Beta-prop_CAF1B_HIR1
WDR55
NBCH_WD40
EIF3I
Beta-prop_EML
Beta-prop_WDR90_POC16_2nd
Beta-prop_WDR75_1st
Beta-prop_Vps41
WD40_MABP1-WDR62_2nd
Beta-prop_SCAP
Beta-prop_TEP1_C
WDR90_beta-prop_4th
ANAPC4_WD40
VPS8_N
Beta-prop_IFT140_1st
WD40_MABP1-WDR62_1st
Beta-prop_IFT122_1st
Beta-prop_RIG_2nd
Beta-prop_IP5PC_F
Beta-prop_DCAF12
DUF1513
Beta-prop_WDR19_1st
PROPPIN
Ge1_WD40
Motif
Other DBs
NCBI-GeneID:
113298093
NCBI-ProteinID:
XP_026402548
LinkDB
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Position
7:109610254..109613690
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AA seq
475 aa
AA seq
DB search
MVREEALVVCSDKSLGAGITIWDMESGDHLLHIPTCASPSHGFLCLRNQFLVASQIHKHG
SFGGGAIFIWPLNKPQAPVRSYPIEAVGPLSCTEDGLYLAGGAPSGNAYVWEVLSGRMLK
SWRAHHKSVNCIAFTADGSILISGSDDGSICIWSMISLLDVADCGNMPSSFHSWSEHTSS
ITGLVSVSESSNYVLISSSMDGTCKVWDIVSGRLLQTQDFSQAITAISLDPEGQLLFSGS
VDGRIFVNRVDIGLEENSNTISDDQLIVLNGHIGSITALSLGMSGLWLISASEDCTACLW
NVRNWAVARRFTHAKGQITNLLVIPRSSLPFVENNQRVSYQPRVSLLDKYQQPSNTSRGT
VAILPSYCSLEDNLSTAGFSTSSSMNNQILELEQRSTPAAIQMKVETNVENRLWATSMTR
HMTDMSKHLRSRLLDLMQCRLVSTPKIDCPGSGKGKKLKVGTSPPLRVEETESPA
NT seq
1428 nt
NT seq
+upstream
nt +downstream
nt
atggtgagagaagaagcattggtagtttgcagtgataagagtttgggtgcagggattaca
atatgggacatggaaagtggggatcatcttcttcacataccaacttgtgcttcgcctagt
catggatttctctgcttgaggaatcaatttcttgttgcttctcaaattcacaaacatgga
tcttttggcggtggagccatctttatctggcccttaaataagccacaagcaccggtccga
agctatccaatagaagcagttggaccactttcgtgcacagaagatggtttgtatcttgct
ggtggagcaccttctggaaatgcttatgtctgggaggttttaagtggaagaatgttgaag
agttggcgtgctcatcacaaatcagtgaattgcattgcattcacagctgacggttctatc
ctgatttctggttcagatgatggttctatatgcatatggtctatgatcagtttgctagac
gtggcagattgtggaaacatgccttcgtcctttcattcttggtcagagcacacgtcctct
ataactggtctcgtatcagtttctgaaagttcaaattatgtactgatttcaagctccatg
gacggcacctgcaaggtttgggatattgtttctgggaggcttctgcaaactcaagacttt
tcacaagccataactgccatcagtcttgaccctgaagggcagcttttgttttcaggaagt
gtagacggaaggatttttgtcaacagagtcgatataggactggaggagaactcaaacact
atatcagacgatcagctgattgtactcaatgggcacattggatccataactgcattatcg
ctcggtatgagtggattgtggctcatctctgcatctgaggactgtacagcttgcctttgg
aatgtcagaaattgggcagttgctcgaagattcacccatgctaaagggcaaataactaac
ttactagtaatcccgcggtcatcgctgccttttgtggagaacaatcagagagtatcatac
cagcctcgtgtttcattgcttgacaaataccaacagccatcaaacacatcaagaggaaca
gtcgctattctaccttcgtattgttcactagaagataatctttccactgctggtttttct
accagcagctccatgaataaccaaatccttgaattagagcaaagaagcactcctgcagca
atacagatgaaggtggaaaccaatgtcgagaaccgactttgggccacaagcatgacgagg
cacatgacggacatgagcaagcatttgcgatcgagattgctagatttgatgcaatgcaga
ttggtatcgactccgaaaattgattgtcctggtagtggaaagggaaagaagcttaaggtt
ggtaccagtccaccattgagagtagaagaaacagaatctcctgcttaa
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