Papaver somniferum (opium poppy): 113298122
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Entry
113298122 CDS
T05758
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH4
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
psom
Papaver somniferum (opium poppy)
Pathway
psom03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
psom00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
113298122
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
psom03041
]
113298122
Enzymes [BR:
psom01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
113298122
Spliceosome [BR:
psom03041
]
Complex C
Other components
Step II factors
113298122
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_N
DEAD
AAA_22
HA2_C
AAA_19
ABC_tran
AAA_30
nSTAND3
ATPase_2
Helicase_RecD
AAA_16
SLFN-g3_helicase
NPHP3_N
T2SSE
Sigma54_activ_2
AAA_29
Flavi_DEAD
Dynamin_N
NB-ARC
nSTAND1
DAP3
SRP54
FtsK_SpoIIIE
Sigma54_activat
AAA_23
Motif
Other DBs
NCBI-GeneID:
113298122
NCBI-ProteinID:
XP_026402581
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All DBs
Position
7:110907524..110915794
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AA seq
701 aa
AA seq
DB search
MAVAVLPILQFEDKIIETVEQNSVVVVIGETGSGKSTQLSQILHRRGYTNSGIIAVTQPR
RVAAVSVARRVAQELNVLLGEEVGYAIRFEDRTTEKTKIKYLTDGVLLRESLSDPELKQY
SVIILDEAHERSLNTDILLGLVKRLIKMRSSNLKVLITSATLDGTKVSEFFSNCPVLTVP
GKLFPVEILYSSERPTSYLDACLNKALNIHTRQPEGDVLIFMTGQDDIDKCVKKLEERVQ
SLEEGCCMDAIILPLHGSLPPEMQVRVFSPPPPNCRRFIVATNIAETSLTVDGVVYVIDS
GYLKQRQYNPSTGMYSLDIVQISKVQANQRAGRAGRTCPGKCYRLYPSDIYHEDFAEVTI
PEIQRSSLAGSVLYLKSLDLPDIDILKFDFLDPPSRDSLEDALKQLYLINAIDESGTITQ
IGRTMSELPLEPSLSRTLIEANEYGSLSQALTVVAMLSAETTLLPTQSKSIDKKRKQAPS
DLPDGSGWGDHIQLLQVYEDWDRANYDPRWCTDNALQVRGMMFTKDVRKQLSQILQKISK
GPLDVQTNRRRRESRQDYKNLRRALCVGYASQLAERMIHHNGYRTLGFKPQLVQVHPSSV
LKADEDGKLPNYVVYHELITTSRPFMRNVCAVEMSWVMPILQKLEKIDVNKLSGGFATPE
ESLQEQVSDLPKKEADIVDPLDRNNQILAARERFLARKLKK
NT seq
2106 nt
NT seq
+upstream
nt +downstream
nt
atggcagtagcagttcttccgattcttcaattcgaagataaaattatcgaaacagttgaa
caaaattcagtagtagttgtaataggagagactggttcaggtaaaagtacccaactctct
caaatcctacatcgaagagggtacacaaattctggaattattgcagttactcaacctcgc
agagtcgctgctgtctccgttgccagacgagtagcccaagaactgaatgtgctgttaggc
gaggaagttgggtacgctattcgatttgaggatagaacaacggagaagactaagattaaa
tatcttactgatggagttttactccgtgaaagcctttcagatccagagctaaagcaatat
tcagttatcatattggatgaggctcatgaaaggagtctaaacactgacattttgttggga
ttggtgaaacgattgataaagatgaggtcatctaatttaaaggttctgatcacttcagca
actctggatggtaccaaggtatcggagttcttctccaattgtcctgttttgactgtccct
gggaagttgttccctgtggagatattgtacagcagcgagcgccctacaagctatcttgat
gcttgcttaaataaggctctgaatatacacacccgacaaccagaaggagatgtgttaata
ttcatgacagggcaggatgatatcgacaaatgcgttaaaaagttggaggagagagttcaa
agtttagaagaaggatgctgtatggatgctataattcttccacttcatggttctttacca
cctgaaatgcaggtgcgtgtgttcagtccgcccccaccaaactgtaggcggttcattgtt
gccacaaacattgctgagacttctttaacagtagatggtgtagtgtacgttattgattct
ggttatctaaagcaaaggcaatacaacccatcaacgggcatgtactctcttgacattgtc
cagatcagcaaagtgcaagctaatcagcgtgcagggagagctggaagaacttgtcctgga
aaatgttatcggctgtacccctcggatatttaccatgaggattttgccgaagtcacgatc
cctgagatacaacgttcttctcttgctggaagtgtgctttatttgaaatcactcgacctt
cctgatatcgatatcctcaaatttgatttcctcgatccaccctcacgtgattctttagaa
gacgctctgaaacaattatatcttatcaatgcaattgatgaaagtggaactattacacaa
attggaaggacaatgtctgagttgccactagaaccttcactttcgagaaccctgatcgag
gcaaatgagtatggttccttgtcccaggccttgactgtggtagccatgctatcagcagaa
acgacattacttcccactcagagtaagagtattgacaagaagaggaaacaggctccttca
gatttaccagacggttctggatggggtgatcacattcagttgctccaagtgtacgaggac
tgggatcgagccaactatgatccacgttggtgcacagataatgcattgcaggtacgaggg
atgatgttcaccaaggatgtcaggaaacaattgtctcaaatactgcagaaaatatcaaaa
ggaccactggatgtgcaaacaaatcgaagacgacgagaaagccgacaagattataaaaac
ttaaggagggctttatgtgtaggttatgcaagccagttggccgagcgaatgattcaccat
aatggttatagaacccttggttttaaaccacagcttgttcaggtacacccatcttcggtt
ttgaaggcagatgaggatgggaagctacccaactatgtggtgtaccatgaacttattact
acctctcgtcctttcatgcgcaatgtttgtgcagtggagatgtcgtgggtcatgccgatc
ttacaaaaacttgagaaaatagatgtaaacaagctcagtggtggatttgctactcctgaa
gaatctttgcaggaacaagtctcagatcttccaaagaaagaagctgatattgtcgatcca
cttgaccgcaacaaccaaattctagctgcccgagaacgttttcttgctcgaaagttgaag
aagtaa
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