Papaver somniferum (opium poppy): 113298371
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Entry
113298371 CDS
T05758
Name
(RefSeq) THO complex subunit 2-like isoform X1
KO
K12879
THO complex subunit 2
Organism
psom
Papaver somniferum (opium poppy)
Pathway
psom03013
Nucleocytoplasmic transport
psom03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
psom00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
113298371
09122 Translation
03013 Nucleocytoplasmic transport
113298371
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psom03019
]
113298371
03041 Spliceosome [BR:
psom03041
]
113298371
Messenger RNA biogenesis [BR:
psom03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
113298371
Spliceosome [BR:
psom03041
]
Complex C
Other components
EJC/TREX
113298371
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
113298371
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Tho2
THOC2_N
Thoc2
ABPF_N
Motif
Other DBs
NCBI-GeneID:
113298371
NCBI-ProteinID:
XP_026402880
LinkDB
All DBs
Position
7:126603661..126622286
Genome browser
AA seq
1861 aa
AA seq
DB search
MSLPPIECKFITEECLREWKNGNTNFMLPDSVPMLRFLYELCWTMVYGDLPFQKCKVALD
SVEFSDKTTNEEISSVFADIVTQMSQDLTMPGENRARLITVAKWLVESALVPLRLFQERC
EEEFLRESEMIKIKAPDLKAKEVRVNTRLLYQQTKFNLLREESEGYAKLVTLLCQSGAEA
LSQNASGATISTIKSLIGHFDLDPNRVFDIVLECFELQPDNHLFLDLIPIFPKSHASQIL
GFKFQYYQRMDVMSPVPSGLYQLAAALVKADFINLDSIYSHLLPKDEDAFELYDSFSAKR
FDEAHKIGKINLAATGKDLMEDEKQGDVTVDLYTALDMESSAVEERSPELVNNQSLGLLN
GFLSVDDWYHAHILFDRLSPLNPVAHDQICKGLFRIIEKSISSAYAAVRQTDHQNLVTSS
ASGYDFSEATDGTTPKTSFIHLPKELFQMLASAGPYLYRNTLLLQKVCRVLRGYYLSALE
LVNCSGGPVSLASTTAGIRDPNQHLRVAKAKVEDALGTCILPSLQLIPANPAVGQEIWEL
MCLLPYEARYHLYGEWEKENERIPMVLAARQTAKLDTRRILKRLAKENLKQLGRMVAKLA
HANPMTVLRTIVHQIEAYRDMIAPVVDAFKYLTQLEYDILEYVVIERLAQGGRDKLKDDG
VNLCDWLQSLASFWGHLCKKYPSMELRGLFQYLVNQLKKGKGIELVLLQELIQQMANVQY
TENMTEEQLDAMAGSETLRYQATAFGMTRNNKALVRSTNRLRDSLLPKDEPKLALPLLLL
IAQHRALVVINADAPYIKMVSEQFDRCHGTLLQYVEFLNSALTPTTAYAQLIPPLEDLVH
KYHLDPEVAFLIYRPVMRLFKCASGSDPDVFWPCNNIKETSMSNTQSESSIPTTELVVDL
GYARKPIMWSELLDTVKEVLPSKAWNSLSPDLYATFWGLTLYDLYVPKSRYDSEIAKQHA
ALKALEELSDNSSSAITKRKKDKERIQELLDRLTYELRKHEENAASVRQRLAREKDKWLS
SCPDTLKINMEFLQRCIFPRCIFSMPDAVYCAQFVRTLHSLGTPFFNTVNHIDVLICKTL
QPMICCCTEYEAGRLGRFLFETLEMAYHWKKKESTYERECGNMPGFAVYYRYPNSQRVTY
GQFVRVHWKWSCRITRLLIQCLESNEYMEIRNALIMLTKISSVFPVTRKSGINLEKRVAK
IKGDEREDLKVLATGVAAALASRKSLWVTDEEFCMGYVDLKPAAVTASKPLGVTVPNGSS
LKAPQMESAVMKNSTIAGQLNDSGNLNKDPTLRARPLDGRLDRTESITVPKSDPEQPKLK
GGSLTNGLEIQCVSTVAVPSGMIQKHTDDPTKGQCDETMAKVAQKTGDSELKATTKRSIG
APLTKQSKHDGIKDENKSVKPVTRHASPLVTSSSERDLPAYPADGRQSAPSSTATTNGNT
VPLSSKVSKAEGGATRPSEPRVSAGKEIDDVEASKTANLSSFPEDSLTASKSMDKQQKRA
IPSEELDRLSKRRKDNNVRDGDGEGRFSDRDRSMDARFPHADVDKTGIDDQGLSRATEKL
LDRSKEKGSERYDRDHRERLERPDKSIGDEVLSERPRDRSMERHGRERSIERAHDRNFDR
VEKLKDDRYKDDRSKLRYSEAPLEKSHIDDRDRFNRQSLPPPPPLPSHMVPQSVSGSRRD
EDADRRVSNTRHMQRLSPRHEEKDRRRSEEISLASDDAKRRREEDFRERKRDERDGSAIK
VEEREKVNIAKDDLDTNAASKRRKLKRDHLSSSDVSEYPMGVQPLPSASVSVSQSLYDGR
ERAERKVSAIQRAGFLEEPSPRMHGKEAANKITRRDSEQLYDREWDDDKRLRPEQKRRHR
K
NT seq
5586 nt
NT seq
+upstream
nt +downstream
nt
atgagccttccgcctatagaatgtaaattcatcacagaagagtgtcttcgcgaatggaag
aatggaaacactaactttatgctaccagactcggtgccgatgcttcgatttctatatgag
ctttgttggactatggtctatggagacttgccttttcagaagtgtaaagtagcattagat
tcggttgaattttccgacaagacaacaaatgaagagataagttcagtttttgcagatatt
gtgactcagatgtctcaagatcttacaatgcctggggagaaccgtgcgcgtcttattaca
gtggccaagtggctggtggagtctgcgttggttccattgaggcttttccaggagcgttgt
gaggaagaattcctccgggaatctgaaatgatcaagataaaggcaccagatctgaaggcc
aaggaggttagagtaaacacacggcttctttaccagcaaacaaaattcaaccttcttcgg
gaggagagcgaggggtatgcaaaactggtaacccttctttgtcaaagtggtgccgaggct
ttatcacagaatgcatcgggagcaactatcagcacaattaagtcattaattggacatttt
gatctcgatccaaatcgcgtgttcgatatcgtactggagtgctttgaactacagccggac
aatcaccttttcttagacttgatacctatatttcccaagtcccatgcttctcaaatattg
gggttcaagtttcagtattatcaacgtatggatgtgatgagccctgttccatcggggctt
tatcagcttgcagctgcgcttgttaaagcagacttcattaatcttgatagcatatattcg
cacttacttcctaaggacgaagatgcttttgaactctatgactcgttctcagcaaagcgt
tttgatgaggctcacaaaattggcaaaataaatctggctgctactggtaaggacctgatg
gaggatgagaagcaaggtgatgtaacagtagatctttatactgccttggatatggaaagc
tctgctgttgaagaacgttcccctgagcttgtaaataatcagagtttgggcctgcttaat
ggatttctttctgtagatgactggtatcatgcacacatcctatttgatcgtctctcccct
ctcaatcctgtggcacatgatcagatctgtaagggcttgtttaggattattgaaaaatca
atctcgtccgcctatgctgctgtccgccaaacagatcatcaaaatctcgtcacctcctct
gcttctggttacgatttctcagaagctacagatggaacaacgccaaagacatcatttatt
catcttcccaaggagctatttcagatgcttgcttctgctggaccttatctttaccgtaac
actctactgctacaaaaggtttgtagagtattgaggggctattacctatccgcattggaa
ctagtgaattgcagtggaggaccagtttctcttgcatctacgactgctgggattagagat
cctaatcagcacttacgagttgctaaagcaaaagttgaggatgctcttggtacatgcata
cttccttcattgcagttaatacccgcaaatcctgcagtgggccaggaaatatgggaatta
atgtgtcttctgccgtatgaggcgcgttatcatttgtatggtgaatgggaaaaagaaaat
gagcgcattccaatggttttggctgcaagacaaacggcaaagttggatacacggagaatc
ttgaaacggcttgcgaaagaaaatctcaagcaactaggtcgaatggtggcaaaacttgct
cacgccaatcctatgactgtattgcggacgattgttcatcagattgaggcatatagggat
atgatcgcacctgttgtagatgctttcaagtacttgacacagctggaatacgatattttg
gagtatgtagtaattgaaaggttggcacaaggtgggcgcgataaactaaaagatgatggt
gttaatttgtgcgattggcttcagtctttggcttccttttggggacatttgtgtaagaag
tacccttcaatggaattaaggggtcttttccagtaccttgttaatcagctgaaaaagggg
aagggaattgagcttgtcctcttgcaggagcttatccagcaaatggcaaatgttcagtat
acagagaatatgaccgaggaacaactggatgcaatggcagggagcgaaacactacgctat
caagctactgcattcggaatgaccagaaacaataaggcattggttagatctaccaacagg
ctaagggactcgctgcttccaaaggatgaacctaagttggcacttccgcttttgttgctc
atagcgcagcatcgtgctctggttgtcataaatgcagatgcaccatacattaagatggtc
agtgagcagtttgataggtgtcatgggactcttttgcagtatgtggagtttctgaacagt
gctctaactccaactactgcctatgctcaactgatacctccgctagaagatcttgtacac
aaataccaccttgacccagaggtggcgttcttgatatatcgtcctgtcatgaggctgttt
aagtgtgcaagtggctctgatcctgatgtattctggccgtgtaataatatcaaagagaca
agtatgtcaaacacgcagtctgaatcttcaatcccaactactgaactggttgtggatctt
ggttacgcgcgcaagcctatcatgtggtcagagcttcttgatacagtcaaagaagtgttg
ccttcgaaagcatggaatagcttatctcccgatctatatgccacattttggggactcaca
ctttatgatctatatgttcctaaaagtcgttatgattctgaaatcgccaaacaacatgcc
gctcttaaagcattagaagaactttcagacaactctagttcggctattaccaaaaggaaa
aaggataaggaacgcattcaagagttgctagatcgtttgacttatgaactccgcaagcat
gaggaaaatgccgcatctgtgcgccagcggcttgcccgggaaaaagacaagtggctcagc
tcctgtcctgatactctgaaaattaatatggaatttcttcagcgctgtatttttcctcga
tgcattttcagcatgccagacgctgtttactgtgcccagtttgtgcgcactctacattct
cttggcaccccattttttaacactgttaatcatattgatgtcctaatatgcaagacctta
caaccaatgatctgctgttgcaccgaatacgaagctggcagacttggaaggtttttgttt
gagactttagagatggcttatcattggaagaagaaggagtcaacatatgaacgtgagtgt
ggaaatatgccagggtttgccgtctactacagatacccaaacagccaacgcgtcacatat
ggccagttcgtcagagtacactggaaatggagctgtagaataactcgattgctgatacag
tgcctggaatcaaatgagtacatggaaattcgaaatgctcttattatgttgacgaaaatt
tcaagtgttttcccagttactcgaaaaagtgggattaatcttgaaaagcgggtagctaaa
attaaaggggatgagagagaggacctcaaggtattggctacaggtgttgctgcagctttg
gcttcacgaaagagtttgtgggttaccgatgaagagttctgtatgggttatgttgatcta
aaacctgcagctgtaacagcttcaaaaccgttaggtgttacagtaccaaatggttcttct
cttaaagctcctcaaatggagtctgctgtaatgaagaatagcacgattgcaggccaactt
aatgattctggaaatctgaataaggacccaaccttgagggcaagacctctagatgggaga
ctggacagaacagaaagcattacagtaccaaaatctgatccagagcaaccaaagctaaaa
ggtggctcactaacaaatggcctggagatacaatgtgtgtccaccgttgcagtaccatct
gggatgatccagaagcatacagatgatcctacaaaaggccaatgtgatgagaccatggct
aaagttgctcaaaagaccggggactctgagctgaaggctacaaccaaaagatcaattggt
gctcctcttacaaaacagtctaaacatgacggaattaaggacgaaaataaatctgttaaa
cctgtcactagacatgctagtcctcttgtaacatcatccagtgaaagagatctccctgcg
tatcctgcggatggtaggcaaagtgcaccctcttccactgctacaacaaatggtaacaca
gtgccgctgtcctctaaagtttcaaaagcggaaggtggtgctactaggccctctgaacct
agggtttcagctggaaaagaaatagatgatgtcgaagcttctaaaactgcaaatttgtcg
tcctttccagaagattctctgactgcttcaaagtctatggacaagcagcaaaagagggcc
attccatctgaagaattggataggctgagcaaaagaaggaaagacaataatgtaagagat
ggagatggtgaaggtcgattttctgatcgagataggtctatggatgcacggttccctcat
gctgatgtggacaaaactggaatagatgatcagggtctcagtagagccactgagaagctt
ttagacagatcgaaagaaaagggcagtgagaggtatgacagagaccacagagaaagattg
gaacgacctgataagtcaattggggatgaagttctcagtgaaaggcctagggataggtcg
atggaaagacatggaagagaacgttcaattgaaagagcccatgataggaattttgacaga
gttgaaaaactaaaggatgataggtataaggatgataggagtaaacttcgttacagtgag
gcgcctttagaaaaatcccatatcgatgaccgtgaccgttttaacagacaaagcttgcct
ccaccgccgcctctgccttcccatatggttccccaatcagttagcggcagtcggagagat
gaagatgccgatagaagggtcagtaataccagacacatgcaaaggctctcccctagacac
gaagaaaaagaccgtagacggtcggaggagatttctttagcttcggatgatgcaaaacga
agaagagaagaggacttccgtgaaagaaagcgtgatgagcgagatggctcagcaataaag
gtggaggagagagaaaaagtaaacattgcgaaggatgacttggacacaaatgcagcatcg
aagaggaggaaacttaagcgagaccatctatcatcttctgacgtcagtgagtatccaatg
ggagtgcaacccctcccttccgcttctgttagtgtgtcacagtcattgtacgatgggagg
gaacgggcagaacggaaagtttcagcgatccaacgagcaggtttccttgaggaaccttcg
ccgagaatgcatggtaaagaggctgccaacaagataacccgtcgtgatagtgaacaactt
tatgacagagaatgggacgacgacaagaggctgagaccagaacagaaacgaaggcatcgg
aaatag
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integrated database retrieval system
