Papaver somniferum (opium poppy): 113298424
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Entry
113298424 CDS
T05758
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH12-like
KO
K12854
pre-mRNA-splicing helicase BRR2 [EC:
5.6.2.6
]
Organism
psom
Papaver somniferum (opium poppy)
Pathway
psom03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
psom00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
113298424
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
psom03041
]
113298424
Enzymes [BR:
psom01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
113298424
Spliceosome [BR:
psom03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
113298424
Complex C
U5 SnRNP specific factors
113298424
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sec63
DEAD
WHD_SNRNP200
Helicase_PWI
ResIII
Helicase_C
BRR2_plug
AAA_22
AAA_30
AAA_11
Motif
Other DBs
NCBI-GeneID:
113298424
NCBI-ProteinID:
XP_026402952
LinkDB
All DBs
Position
7:complement(130496871..130504519)
Genome browser
AA seq
2191 aa
AA seq
DB search
MAHPGGGGAEAHARFKQYEYRANSSLVLTTDSRPRDTHEPTGEPETLWGKIDPKHFGDKA
YKGRPQELEEKINKSKKKKERGGDEDLASGRRDSKRRRLGGGGGLQESSVLNIAEEGAYQ
PKTKETRAAYEALLSCIQQHLGGQPQEILCGAADEVIPVLKNDKLKNVDKKWEIEKLLST
ISSTTFDLLVSVGKLITDYQDGAGDVPSGASNGDEALDDDIGVAVEFDEDEEDDESDYDQ
VQEYDDGEDEEDDGPETKRAGAMQMGGIDDDEMQDANEGMTLNVQDIDAYWLQRKISNAY
GEIDPQQCQKLAEDVLKMLAEGGDNREVERNLLVLLDFDKFELIKVLLRNRLKIVWCTRL
ARAIDEEERKKIEEEMMGLGPELASILEQLHATRATAKERQKIVEKNIREEARRLKDGSG
GGDEDRDWERRGPVIDGDSESGWLKGQRQLLDLESISFQQGGLLMANKKCTLPDGSYRNH
SKGYEEVHVPAPKLKPLAPGEELIKISVMPDWAQPAFGGMSQLNRIQSKVYETALFTAEN
LLLCAPTGAGKTNVAMLTILQQIALHRNPDGSFDNSKYKIVYVAPMKALVAEIVGNLSNR
LKHYNVNVKELSGDQSLTRQQIDDTQIIVTTPEKWDIITRKSGDRTYTQLVRLVIIDEIH
LLHDNRGPVLESIVARTVRLIETTKEHIRLVGLSATLPNYEDVALFLRVDLKKGLFHFDN
SYRPCPLAQQYIGITVKKPLQRFQLMNDVCYEKVMATAGKSQVLIFVHSRKETAKTAKAI
KDTALANDTISRFLKEDSASREILREQIEFVKSNDLKELLPYGFAIHHAGMSRADRDIVE
EIFAEGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDVMQMLGRAGR
PQYDTYGEGIIITGHSELQYYLSLMNAQLPIESQFVSKLADQLNAEIVLGTVQNAKEACN
WLGYTYLYIRMLRNPTLYGLAADVLSRDKLLEERRADLIHSAATVLEKNNLVKYDRKSGY
FQVTDLGRIASYYYITHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELA
KLLDRVPIPVKESLEEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLMRALFEI
VLKRGWAQVAEKALNLCKMVGKQMWSVQMPLRQFHGIQKDLLTKLERKELAWDRYYDLTS
TEIGELIRQQKVGKMLHKYIHQFPKLNLAAHVQPITRTVLRVELTITPDFMWEDRVHGFV
EPFWVIVEDNDGEFILHHEYFMLKKQYFDEDHTLSFTVPIYEPLPPQYFIRVVSDKWLNS
QSVLPVSFRHLILPEKYPPPTELLDLQPLPVTALRNPAYEALYQEFKHFNPVQTQVFTVL
YNTDDNVLVAAPTGSGKTICAEFAVLRNHQKGSNNVMRVVYIAPMEALAKESYRDWERKF
GKGLGLRVVELTGETSTDLKLLEKGQIVISTPEKWDSLSRRWKHRKHIQQVSLFVIDELH
LIGGQGGHILEVIVSRMRYIASQSENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPG
VRPVPLEIHIQGVDIANFEARMQAMTKPTYTAIVQHARNGKPALVFVPTRKHARLTAADL
MTYSNADGGECPPFLLKSEEELESFISKVTEPMLSATLRHGVGYLHEGLSSVDLEIVTHL
FEAGWIQVCVASNSMCWGMPLSAHLVVVMGTQHYDGRENTHTDYPVTDLLQMMGHASRPL
LDNSGKCVILCHAPRKEYYKKFLYEAYPVESHLQHYLHDNLNAEVVAGVIENKQAAVDYI
TWTFMYRRLTQNPNYYNLQGVSHRHLSDHLSELVEKTLSDLEASKCVSVEDETDLSPLNL
GMIASYYYISYTTIERFSSSLTSKTKIKGLLEILASASEYDELPSRPGEEELIRRLINHQ
RYSFENPRCTDPHVKANALLQAHFARHTVVGNLASDQREVLLSASRLLQAMVDVISSNGW
LDLALLTMEVSQMVTQGMWERDSMLLQLPHFTKELAKRCQENPGKSIETVFDLAEMEDDE
RQELLQMSDSQLLDIARFCNRFPNIDMTYEVLESDNVMAGDDISLQVTLERDLEGRSEVG
PVDAPRYPKAKEEGWWLVVGDSKTNQLLAIKRVSLQRKSKVKLEFAAPAETGRKSYTLYF
MCDSYLGCDQEYSFTIDVKEAGEAGDDSMRE
NT seq
6576 nt
NT seq
+upstream
nt +downstream
nt
atggcacatccgggagggggtggagccgaagctcacgcccgatttaaacaatacgagtat
agagcaaattcaagtctagtactcacaaccgattcacgtcctcgtgatacacatgaacca
actggtgagccagaaacactgtggggtaaaatcgatccaaaacacttcggtgataaagct
tataaaggcagacctcaagaactcgaagaaaagattaacaagtctaagaaaaagaaagaa
cgcggtggtgatgaggacctagcgtctgggagaagagatagtaaacgaaggcgtttaggt
ggtggtggtggtctgcaagagagtagtgttttgaatatagctgaggaaggtgcttatcag
cctaaaacaaaagagacacgagctgcttacgaggcactactgagttgtattcaacagcat
ttagggggacagccacaggaaatcttatgtggtgctgctgatgaggttatccccgtgctt
aagaatgataagcttaagaatgtggataagaagtgggagattgagaagttgttgagtacc
atatctagtactacttttgatcttcttgtgtctgttgggaagcttattacagattaccaa
gatggggctggtgatgttcccagtggtgctagtaatggggatgaggcgcttgatgatgat
attggtgttgcggttgagtttgacgaggatgaggaggacgacgagagtgactacgatcag
gtccaagagtacgacgatggtgaagatgaggaagatgacggacctgaaacaaagagagct
ggggctatgcagatgggtggtatagatgatgatgagatgcaagacgcgaatgagggtatg
actttgaatgtccaagacattgatgcttattggcttcaaaggaagatttctaatgcatac
ggagagattgacccccaacagtgccagaaacttgccgaggatgtacttaaaatgcttgct
gaaggtggtgacaacagggaagtagagcgtaatctcctggtgcttttggattttgataag
tttgagctaatcaaggtgcttttgcggaaccgcttaaagattgtgtggtgtactcgtctt
gcaagggcaatagacgaggaagagaggaagaagatcgaggaagaaatgatgggtttgggt
cctgaattggcttccattcttgagcagttacacgccacaagagcaactgctaaagaacgg
cagaagattgtggagaaaaatattagagaagaagctaggcgattgaaggacgggagtggt
ggtggggatgaggatagagactgggagaggagaggtccggtgattgatggagactcggag
agtggttggttgaaagggcagcgtcaacttttggacctagaaagtatatcttttcagcaa
ggtggtttgttgatggctaataagaaatgcactcttcctgatgggtcttatcggaatcac
agcaaagggtacgaagaagttcatgtgcctgcgcctaagcttaaaccacttgcccctggc
gaagagcttattaagatatcagtcatgcctgactgggcacaaccagcctttggtggtatg
agtcagttgaataggatacagagtaaagtttatgagaccgcacttttcacagcagagaat
ctccttttgtgtgctccgactggggctgggaaaacgaatgtggcaatgttaaccatactt
cagcagattgcgttgcataggaatccagatggctcctttgataatagcaagtacaagatt
gtttacgtggcaccaatgaaagcattagttgctgagatagttggaaatttgtctaatcgt
cttaagcactacaatgtaaatgttaaagagctaagtggagaccagtccctgactcgccaa
caaattgacgacacacagataattgttacgactcctgagaagtgggatatcatcactaga
aaatcgggagaccgaacatatacacagcttgtgaggcttgtcatcattgatgagatccat
ttacttcacgataatagggggccagtgcttgaaagcattgttgcgagaactgttagattg
atcgagaccacaaaggagcacattcgtttggttggtttgtcagcaacactccctaattac
gaagatgtggctctatttttacgagttgatctgaaaaagggactattccattttgacaac
agttacagaccatgcccgcttgctcaacagtatattggaatcacagttaagaagccttta
cagagattccagttgatgaatgacgtctgttacgagaaggtgatggccacagcaggcaag
tcccaagtcctcatatttgttcattcgagaaaagagacggcgaaaacagcaaaagcaata
aaagatacagctcttgccaatgacaccattagtcgttttctgaaggaggatagtgcaagc
cgtgagattttacgagaacaaatagagtttgtcaagagcaatgatctcaaggagttgtta
ccttatgggtttgcaattcatcatgctggtatgtcgagagcagaccgtgatattgtcgag
gaaatttttgctgaagggcacgtgcaagtgctggtatccactgctacccttgcatggggt
gttaatttaccagcccacaccgtgatcatcaagggtactcagatttacaatcccgagaaa
ggagcgtggactgaattaagtccgcttgacgtcatgcagatgcttggtcgtgcagggagg
cctcaatatgacacctacggggaagggataatcataacaggacatagtgaactgcagtat
tatctctcgctcatgaatgcacaacttcctattgaaagtcagtttgtgtcaaagctggct
gatcagctaaatgctgaaatcgttttggggacagttcaaaatgctaaagaagcatgcaat
tggcttggctacacatacttgtacattcgcatgttgagaaatccaacactgtatggtttg
gcagctgatgttctgagtagggacaagctcttggaggaaagaagggcagatttgatccat
tctgctgcaactgtcttggagaagaataatttggtgaagtacgataggaaaagcgggtac
ttccaagtcactgaccttggtcgaatcgccagttattattatattacccatggaacgata
tctacttacaatgagcatctgaagccaacaatgggtgatatcgagctttgtcggttgttc
tcacttagcgaagagtttaaatatgtgactgtgagacaagatgagaagatggaactcgct
aagcttttggatcgtgttcctattcccgttaaggagagcttggaagaacccagtgccaaa
attaatgttttgctccaagcgtacatttcacagctgaagcttgaagggctctcattgaca
tctgatatggtgttcatcactcagagtgctggacgtcttatgcgagcgctttttgagatt
gtattgaaaagagggtgggctcaagtagctgagaaggctttgaatttgtgcaagatggtt
ggcaagcagatgtggagtgttcaaatgcctcttcgccagttccatggtatccaaaaggac
ttgctgacaaaattggagaggaaagaattggcctgggacaggtactatgatttaacctct
acggagattggagagctcatccgtcaacagaaggtaggaaaaatgctccataaatatatt
caccagttcccaaagctgaacctagcagcacatgttcaacccatcacccgtacagttcta
agagtcgaacttacaattacgccggattttatgtgggaggacagagttcatggatttgtg
gaaccattttgggttattgttgaggataatgatggggagtttattcttcatcacgagtat
tttatgctgaagaagcagtatttcgacgaagaccatacgttaagttttactgtgccaatt
tacgagccgctgcctcctcagtatttcattcgagttgtgtccgataagtggctgaactct
cagtcagtattacccgtgtcatttagacaccttattttaccagaaaaataccctccccct
actgagttgttagacttgcagccactgcccgttactgcgttgagaaatcctgcatatgag
gctctttatcaggagttcaagcacttcaaccctgtgcaaactcaggtcttcactgtctta
tataatacagatgacaatgtcttggttgcagcgccaacaggaagcggtaagacaatttgt
gcagagtttgctgtgttgaggaatcatcagaaaggatcgaataatgtcatgcgtgttgtt
tacattgctcctatggaagctcttgcaaaggagagttatcgtgattgggaaaggaagttt
ggaaagggattaggcttgagagtggtggaactgactggtgaaacatcaacagatttgaaa
ctgcttgagaaagggcaaatagttataagcactcctgagaaatgggattctttgtctcgc
agatggaagcatcgcaaacacattcaacaggttagcctttttgtcattgacgagctccac
ttgattgggggtcaaggtggccatattttggaggtaattgtttctagaatgagatacatt
gcaagtcagagtgagaacaagatccgcatagtggcattgtcaacttcattggcaaatgca
aaagatcttggggagtggataggtgcaacctctcacgggctctttaacttcccgccaggt
gttcgtcccgttccactggagatccatattcaaggagtggatattgctaacttcgaagca
aggatgcaagcaatgacaaaaccaacctacaccgccattgtccaacatgccaggaatggg
aaacctgcacttgtatttgttcctactaggaagcatgccaggcttactgcggctgatttg
atgacttactctaatgctgatgggggggagtgtcccccgtttctactgaagtctgaggaa
gaactggagtcattcatttccaaagtcacagagcccatgttgagtgccactcttcgtcat
ggtgtgggctacctacacgaaggcctctccagcgtcgatcttgaaattgtcactcattta
tttgaagctggttggatacaggtctgcgttgcgagcaattcaatgtgctggggaatgccg
ttatcagctcacctggtggtcgttatgggaacacaacactatgatgggagagaaaatact
catactgactaccccgtgactgacctactgcagatgatgggtcatgctagtagacctctg
ttggataattctggcaaatgtgtcatcctttgccacgctccaaggaaggaatactacaaa
aagttcttgtatgaagcttatcccgtggagagtcatctgcagcactatttgcatgataat
ctgaatgcggaagttgttgctggagttatcgagaacaaacaagctgcagtggattatatt
acctggacatttatgtataggaggctcactcaaaatccgaactactacaatctccaggga
gttagccataggcatctctcagatcacctttcggagctcgtggaaaaaacattaagtgat
ttggaagcaagtaaatgtgtttctgtggaggatgaaacagatctttctcctctgaacctg
ggaatgattgcgtcgtattattatataagttacacaaccatagaacgattcagttcttca
ctgacgtccaaaacaaagataaaggggcttctggagattctggcttcggcttctgagtat
gatgagcttccttcgcgaccaggggaggaagaactgatacggaggttgattaaccatcag
agatactcattcgaaaaccccagatgtacagacccgcatgtgaaggcaaatgcgctgctc
caggcccacttcgcgaggcacacggttgttgggaacttggcatcggatcagcgagaggtt
ctactgtctgctagtcggcttctccaagcaatggttgatgtaatctctagcaatggttgg
cttgaccttgctcttcttactatggaagtcagccaaatggtcactcaaggcatgtgggaa
cgtgattccatgcttcttcagcttccacacttcaccaaagagctggctaagaggtgtcaa
gagaacccagggaagagtatagagacagtatttgatttggcggagatggaggacgatgag
aggcaggagttgttacagatgtcagattcgcagttactagacatagcccgattctgcaac
cgttttcctaacattgatatgacgtatgaggtgctggagagtgataacgtgatggctggg
gatgatatttcgctgcaagtcacacttgaacgggatcttgaaggtagatcagaggtggga
cccgtggatgctcccaggtatccaaaagctaaagaagaagggtggtggctggtagttggt
gatagcaagactaatcagctgcttgcaattaagagagtgtctctgcagagaaaatcgaaa
gtgaagctcgagtttgctgccccggcagaaactgggagaaagtcatacacgctgtatttc
atgtgcgactcttatctgggttgtgaccaagagtacagttttacaattgatgtcaaagaa
gctggtgaggcaggtgatgacagtatgagagagtga
DBGET
integrated database retrieval system
