Papaver somniferum (opium poppy): 113299609
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Entry
113299609 CDS
T05758
Name
(RefSeq) putative transcription elongation factor SPT5 homolog 1
KO
K15172
transcription elongation factor SPT5
Organism
psom
Papaver somniferum (opium poppy)
Pathway
psom03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
psom00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
113299609
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
psom03021
]
113299609
03019 Messenger RNA biogenesis [BR:
psom03019
]
113299609
Transcription machinery [BR:
psom03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
113299609
RNA polymerase I system
113299609
Messenger RNA biogenesis [BR:
psom03019
]
Eukaryotic type
mRNA processing factors
3' end processing
DRB sensitivity inducing factor (DSIF) complex
113299609
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
KOW1_SPT5
KOW2_Spt5
KOW6_SPT51-2
KOW4_SPT5
Spt5-NGN
KOW7_SPT5
KOW
KOW5_SPT5
KOWx_SPT5
Spt5_N
GPKOW_C
KOW6_SPT5
ProQ_C
PSP1
Motif
Other DBs
NCBI-GeneID:
113299609
NCBI-ProteinID:
XP_026404454
LinkDB
All DBs
Position
7:complement(220152757..220161230)
Genome browser
AA seq
1041 aa
AA seq
DB search
MPRRRDDDDFDGEEDDDYEEEEEDLDDDEDVRGSRGGGKKRRRSDFIDDIAEEDEEEEEE
DDYDDEDYGGGGGGSSKKQKKKSSGGSQFFELEAYEDDSGNEDEEEEGEDDFIDHTDAEL
HEEGGGRRIPRPLLSREDDAEEIEALERRIQQRYAKSNHAEYDEETTDVEQQSLLPSVKD
PKLWMVKCAIGHEREAAVCLMQKCIDRGSEMQIRSAVALDHLKNYIYIEADKEAHVREAC
KGLRNIYAMKVMLVPIKEMTDVLSVESKAIDLAEDTWVRMKIGTYKNDLAKVVNVDNVRQ
RVTVKLIPRIDLQAVANKSEGREVVKKKGFNPPPRFMNIEEAKEMGILVERRRDPDTNDY
FWKIEGMMFKEGFLYKTVSLKSIYSQNIRPTFDELEKFRKPGDGDGDVASLANLFRDRKK
GHFMKGDAVIVIKGDLKNLMGWVEKVEEDNVHIRPKMKDLPKTLAVNQKELCKYFKPGDH
VKIVQGAQEGATGMVVKVEGPILILVSDTTKEDIRVFADYVVESSEVTSGVTRIGDYELH
DLVLLDDTNFGVIIRVESEAFQVLKGVPDRPEVALVKLREIKSKIDKRNIVAQDRSKNTI
NVKDVVRILEGPCKGKQGPVEHIYRGMLFINDRHHLEHAGYICAKSQACMVVGGSRVNGD
RNGGPLSRYPLRAAPRVPPSPRNTRGGRPPIDSGGRHNHRGGRGHDSLIGSTIKIRLGPF
KGYRGRVVDVTGPSVRIELDSQMRVVTVTRDQISDNITVTTTPRETPRYGMGSETPMHPS
RTPLHPYMTPMRDTGATPIHDGMRTPMRDRAWNPYAPMSPARDSWEDGNPGSWGASPQYQ
PGTPPARSYEAPTPGTGWANTTSGSYSEAGTPRDNSPAYANAPSPYLPSTPGQPMTPGSA
SYLPGTPGGQPMTPGGGGLDLMSPAIGGDADGPWYMPDILVNVRKSGEDSIIGVVRDVLP
DGSCKVSLGSGGNGEITTALPHELEMVVPRKSDKIKIMSGAQRGSTGKLIGIDGTDGIVK
VDDTLDVKILDMVILAKLAHS
NT seq
3126 nt
NT seq
+upstream
nt +downstream
nt
atgccacggcggcgtgacgatgatgattttgatggtgaagaagatgatgattatgaagaa
gaagaagaagatcttgatgacgatgaagatgtaagagggagtcgtggtggtggtaagaaa
cggagaagatccgattttattgatgatattgctgaagaagatgaggaggaggaagaagaa
gatgattatgatgatgaagattatggtggtgggggtggtggtagtagtaagaaacagaag
aaaaaatcatctggtggttctcagttttttgaacttgaagcgtatgaagatgattcgggc
aatgaagatgaggaagaagaaggcgaggatgactttatagaccacactgatgctgaattg
cacgaagaaggtggtggtagaagaataccacgtcctctgttatcccgtgaggatgacgca
gaagagattgaagctctcgagagaagaattcagcaacggtatgctaagtctaaccatgca
gaatatgatgaagaaaccactgatgttgaacaacaatctcttttgccatcagttaaggac
ccaaagttgtggatggtgaaatgtgcgattggacatgagagagaggcagctgtttgcctt
atgcagaagtgtattgatagaggttctgagatgcagataagatctgctgttgctcttgat
catcttaagaactatatatacattgaagctgacaaggaggcccatgtgagagaggcttgc
aagggtcttcgaaatatatatgctatgaaagtcatgcttgttccaataaaagaaatgaca
gacgttctttcagttgaaagcaaagccattgatctggctgaggatacgtgggtacggatg
aagatagggacatataaaaatgatcttgcaaaggttgtgaacgtggacaatgtgcgtcag
cgggtaacagttaagctaatcccaaggattgatttacaggcagttgctaataagtcggaa
ggcagggaagttgtgaagaaaaagggatttaatccccctccacgtttcatgaacatagag
gaagcaaaagaaatgggtattctcgttgaacgtaggagggatccagatactaatgattac
ttttggaaaattgaaggaatgatgtttaaggaaggtttcctatataaaacagtatcattg
aaatccatttactcccagaacatacgcccgacttttgatgagcttgagaaattccgtaag
cctggagatggagatggtgatgtagctagtctagccaatttattccgtgacaggaagaag
ggccactttatgaagggtgacgctgttattgttattaaaggggatctcaaaaatttgatg
gggtgggttgagaaagtagaggaagataatgtgcacatcagaccgaaaatgaaggactta
cctaaaacccttgcggtgaatcagaaggagctttgcaaatactttaaacctggcgatcat
gtgaagattgttcaaggggcccaggaaggtgctactggtatggtagtcaaggttgaaggt
cccatactgatccttgtatctgatacaaccaaggaggatattcgagtatttgcagactat
gtcgtcgagagttctgaagtaacttctggtgtaactagaattggtgattacgagttgcat
gatcttgtgttacttgatgacacaaacttcggggtaatcatacgtgtagagagtgaagca
ttccaggtactgaagggagttccagatagacctgaagttgcacttgtaaaattgagggag
ataaaaagcaagattgataagaggaacattgttgcacaagatcggtccaaaaacactatc
aatgtgaaagatgttgtgaggattctggagggaccttgcaaaggtaagcaaggtcctgtt
gaacacatatatagaggaatgttgttcataaatgaccggcatcacctggagcatgctggt
tatatttgtgcaaagtcacaagcttgcatggtcgttggtggctcacgtgtgaatggcgat
agaaatggtggtcctctctcaagatatcctctcagagctgcacctcgtgttcctccatct
ccaagaaacactagaggaggaagacctcctatagactctggaggaagacataatcataga
ggtggacgagggcatgattctttaattggcagtaccatcaaaattcgcctgggtcccttt
aagggataccgtgggcgcgtggtagatgttactggcccgtcagttcgaattgaattagac
tctcagatgagggttgttacagttacccgtgaccaaatatctgacaatatcacagttaca
actacaccccgtgaaacacctcgatatgggatgggaagcgaaacaccaatgcatccttct
cgaactccactgcatccatatatgactcctatgagagatactggagcaactccgatacac
gatggtatgcggacacctatgcgggatcgggcttggaatccttacgctcccatgagtcca
gcaagggatagctgggaagatggcaatcctggctcatggggagctagcccgcaatatcag
cctggaactcctcctgcacgatcttatgaagcaccaaccccaggtacaggctgggcaaac
acaaccagtggtagctacagtgaagctggaacaccaagagataacagtccagcatacgcg
aatgcaccaagtccctatttgccgtcaactcctggtcaaccaatgacaccgggttcggca
tcatacttgcccggcactcctggtgggcagccaatgacgcctggaggtggtggtcttgat
cttatgtctcctgctattggtggagatgctgatgggccatggtatatgcccgacattttg
gtcaatgtacggaaatctggagaagactccataataggtgttgtaagagacgtgcttccg
gatggttcttgcaaagtatcacttggatcaggtggaaacggagagatcaccacagctctt
ccacacgaattggagatggtggtcccaaggaagtcagataagatcaaaatcatgagtggt
gcccaacgtgggtcaactggtaaactgattggtatcgatgggacggatggcattgttaaa
gttgatgacacacttgatgtgaagatattagacatggtcatcctagctaagctagcacat
tcttag
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integrated database retrieval system
