Papaver somniferum (opium poppy): 113299756
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Entry
113299756 CDS
T05758
Name
(RefSeq) general transcription and DNA repair factor IIH subunit TFB1-1-like
KO
K03141
transcription initiation factor TFIIH subunit 1
Organism
psom
Papaver somniferum (opium poppy)
Pathway
psom03022
Basal transcription factors
psom03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
psom00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
113299756
09124 Replication and repair
03420 Nucleotide excision repair
113299756
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
psom03021
]
113299756
03400 DNA repair and recombination proteins [BR:
psom03400
]
113299756
Transcription machinery [BR:
psom03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
113299756
DNA repair and recombination proteins [BR:
psom03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
113299756
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BSD
PH_TFIIH
GRAM
SHOCT
Motif
Other DBs
NCBI-GeneID:
113299756
NCBI-ProteinID:
XP_026404626
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All DBs
Position
7:complement(229034637..229041708)
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AA seq
599 aa
AA seq
DB search
MASGQVVMRARYKNNGVRDPGVQGVLIMTEDKLDFSPDDPMPSAKLNVGFRSIKGHKFSR
EGSQRQALLMLTGSDKNYTFEFDRFTERDICRDFVGKVLGKIQAKESSASDAKVDPEKSA
TTLHDEQLRPEEMKLRMKLLAENSELQKLHKQFVIGGVLTEAEFWATRKKLLAVDASRMS
KQRLGFKSAMLADVRPLTDGRTNKVTFSLTPEIIQQIFTEKPAVHQAFLKFVPSKMTEKD
FWTKYCRAEFLHRTKNAVAAAAEAAEDEELAVFLKQDAILAGEARQKIRRVDPTLDMEAD
EGDDYIHLPDHGIFRDGSKEFTDSEYEQYKRTLAQDLNRHAAVVLEGRTLDMELGDTRTV
AEALAKSKKADLATQMSDEKANHSRSERASRMAEIEDLQTPNNLPLAPLNIKDPREYFDS
QQANALKALGDTAVGTKTINCNVSTAQAYGFLRKSISEMKVTGLSDPVIESEVARKVLIG
LSQQLSSTKYNLGKNPQESILDRLPKKTKEELLHFWISIQELLKHFWSSYPITTTYLNAK
VSRLKDAMADIYPKLQGIKESAQSDFRHQVSLLVQPMVQALDAAFTHYDADLQKRSMRS
NT seq
1800 nt
NT seq
+upstream
nt +downstream
nt
atggcaagcggtcaggtagttatgcgtgctaggtataagaacaatggtgtcagggatcct
ggcgttcaaggagttcttattatgacagaggacaaacttgatttctcacccgatgatcct
atgccatctgcaaaactcaatgttgggtttagatccattaaaggtcacaaatttagcagg
gagggaagccaaagacaagcgctactaatgcttacagggagcgataagaattacacattt
gagtttgatagatttactgaacgtgatatatgccgagattttgttggaaaggtccttgga
aagatccaagctaaggaatcatctgcatcggatgccaaagtggatcccgagaagtctgca
actacactgcatgatgagcagctccgtccagaagaaatgaagcttcggatgaaactgcta
gctgaaaatagtgagttgcagaagctgcataagcaatttgtaattggtggtgttttgact
gaagctgaattctgggccacaagaaagaaattgcttgctgttgatgccagcaggatgtct
aaacagcgattggggttcaaaagtgcgatgcttgcagatgtcaggccactgacagatggc
cggacaaacaaagtcactttcagcctgactccagaaattattcagcagattttcactgaa
aaaccagctgttcatcaggcatttctgaaatttgtcccaagcaagatgactgaaaaggat
ttctggacgaagtattgtagagcagagtttcttcatagaacaaaaaatgctgttgcagct
gcggctgaagctgctgaagatgaggagctcgctgtcttcctgaagcaggatgccatattg
gccggtgaagctcgccagaagatcaggcgtgttgatccaacattagatatggaagctgat
gaaggggatgattacatacatcttccggatcatggaatttttcgcgatgggtccaaggag
tttactgattccgaatatgaacaatataagaggactctcgcacaagatcttaaccgacat
gcagcagtggtcttggaaggacggactttggatatggaactaggggacacacgaactgta
gcagaagcgcttgccaagtccaaaaaggccgacttagctactcaaatgtctgatgagaag
gcaaatcatagtcgttcggaaagggcttctcgaatggctgaaattgaagatcttcaaaca
cctaataaccttccattggcacctctgaatattaaggatccacgggagtactttgattct
caacaagctaatgcactcaaagccctaggagatacggcagttggaacaaaaacaatcaat
tgtaatgtgagcacggcacaagcatatgggtttttgaggaagtcaatctctgagatgaaa
gtaacaggattgagtgatcctgtaattgagtcggaagttgctcgtaaggttcttattggt
ttgtctcagcagttatcgagtaccaaatataatcttgggaagaatccacaggaaagtatc
ctggatagacttccgaagaaaactaaagaagagctactgcacttctggatatccattcaa
gaattattgaagcatttctggtcatcatatcctattacaacaacataccttaatgccaag
gtaagcagactgaaggatgccatggcagatatttatcccaagctgcagggaattaaggaa
tccgcacaatcagattttaggcatcaagtttctctcctagttcaaccaatggtgcaggct
ctggatgctgcatttactcattatgatgcagatttgcagaagagatcaatgaggagctga
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