Papaver somniferum (opium poppy): 113300060
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Entry
113300060 CDS
T05758
Name
(RefSeq) pre-mRNA-processing factor 17-like
KO
K12816
pre-mRNA-processing factor 17
Organism
psom
Papaver somniferum (opium poppy)
Pathway
psom03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
psom00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
113300060
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
psom03041
]
113300060
Spliceosome [BR:
psom03041
]
Complex C
Other components
Step II factors
113300060
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_CDC20-Fz
WDR55
WD40_WDHD1_1st
Beta-prop_EML_2
EIF3I
Beta-prop_WDR90_POC16_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_EML
Beta-prop_RIG_2nd
Beta-prop_IFT122_1st
WD40_RFWD3
Beta-prop_WDR75_1st
Beta-prop_SPT8
Beta-prop_EIPR1
WDR90_beta-prop_4th
ANAPC4_WD40
Beta-prop_TEP1_C
Beta-prop_DCAF4
WD40_MABP1-WDR62_1st
WD_LRWD1
Beta-prop_NWD2_C
Beta-prop_IFT140_1st
Beta-prop_Vps41
NBCH_WD40
Beta-prop_SCAP
Motif
Other DBs
NCBI-GeneID:
113300060
NCBI-ProteinID:
XP_026404996
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All DBs
Position
7:246628008..246632196
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AA seq
587 aa
AA seq
DB search
MDLLQNYTKSDDEDEEEKQVNEEENPPSPDSSPPRISLPSKSSAPTVDDTMLALTVAGKN
RILNKPIDPVQHVVAYNPTYDQLWAPICGPAHPYAKDGLAQGMRNHKLGFVENAAIDTFV
FDEQYNTFHKYGYAADPSGSSGTNYVGDLDALQKNDGISVYNIPQSKQRKRKLEKKIERQ
EDEANDVDLDDVNNPASENWLKKNRQSPWAGKKQGVEVELTEEQKKYAEEYAAKKAEKEK
GSDNKGEVVAEKSTFHGKEEKDYQGRSWIAPPKDAKAKNDQCYMPKRWIHTWSGHTKGVA
AIRFFPKQGHLLLSAGMDSKVKIWDVHNSGKCMRTYMGHGKAVRDISFSNDGTKFLSAGY
DKNIKYWDTETGQVISTFSTGKVPYVVKQNPDDDKQNILLAGMSDKKIVQWDMNSGQITQ
EYDQHLGAVNTITFVDDNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPAISLHPN
SNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGQYVMSGDGEGKC
WFWNWKTCKVSRTLKCHEGVCIGVEWHPLEQSKVATCGWDGMIKYWD
NT seq
1764 nt
NT seq
+upstream
nt +downstream
nt
atggatcttttacagaactatactaagagtgatgatgaagatgaagaagaaaaacaggta
aatgaagaagaaaaccctccttcaccagattcatctccaccaagaatttctcttccatca
aaatcttcagctcctaccgtcgatgatactatgcttgctttaacagtagcaggtaaaaat
cgaattcttaataaacctattgatccagttcaacatgtagtagcttacaatccaacttat
gatcaactatgggcaccgatctgtggtcctgctcatccttatgcaaaagatggtctagct
caaggcatgagaaatcataaattaggttttgttgagaacgcagcaattgatacatttgtt
ttcgatgaacaatataatacgtttcataaatatggttatgctgctgatccttcgggttca
tccggaaccaattatgtcggtgatttagatgcgttacagaaaaacgatggaatttctgtt
tataatattcctcaatctaaacagagaaagagaaagctcgagaaaaagattgagcggcaa
gaggatgaggctaatgatgttgatttggatgatgttaataatcctgcatccgaaaactgg
ttaaagaagaatagacagagtccctgggctgggaagaaacaaggggtggaagttgaactt
acagaggagcaaaagaagtatgctgaagagtatgcggcgaaaaaggctgagaaggagaag
ggcagtgataataaaggggaagttgtggctgagaagagtacatttcatgggaaagaagag
aaagattatcagggtaggtcatggattgcaccaccaaaagatgcaaaagcgaaaaatgat
caatgttacatgccaaaaagatggattcatacttggagtggtcatacaaagggtgttgct
gccattcggttctttccgaaacaaggacatctgctactttcagccggaatggattcaaag
gttaagatttgggatgttcacaattctggtaagtgtatgagaacatatatggggcatgga
aaggcggttcgtgatatatcgttttctaatgatgggactaagtttttgagtgctgggtat
gataagaatattaagtattgggatacagaaactgggcaggtgatatccactttttcaact
gggaaggtaccatatgtggttaaacaaaatcctgacgatgataaacagaatattttactg
gctggaatgagcgataagaagatagttcaatgggatatgaattctgggcagatcacacaa
gagtatgatcagcatttgggggcagtgaatactatcacatttgttgatgataaccggaga
tttgttacgtcaagtgatgataaatctcttcgagtgtgggaatttggaatcccagttgtt
attaagtacattagtgaacctcatatgcactcaatgccagcaatttccttgcacccaaat
tcgaattggcttgcagcacagagcttggacaaccagattcttatttacagtacaagggag
aggtttcagcttaataagaagaagaggtttgcagggcacattgtggctgggtatgcttgc
caagttaatttctcaccggacgggcagtatgttatgtctggagacggtgagggcaagtgt
tggttttggaattggaagacttgcaaagtttcacgaactctgaagtgtcatgaaggtgtc
tgtattggagttgagtggcacccattggaacaaagtaaagtggctacttgtggctgggac
ggcatgatcaaatactgggactag
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