KEGG   Papaver somniferum (opium poppy): 113301144
Entry
113301144         CDS       T05758                                 
Name
(RefSeq) replication factor C subunit 2
  KO
K10755  replication factor C subunit 2/4
Organism
psom  Papaver somniferum (opium poppy)
Pathway
psom03030  DNA replication
psom03410  Base excision repair
psom03420  Nucleotide excision repair
psom03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:psom00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    113301144
   03410 Base excision repair
    113301144
   03420 Nucleotide excision repair
    113301144
   03430 Mismatch repair
    113301144
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:psom03032]
    113301144
   03036 Chromosome and associated proteins [BR:psom03036]
    113301144
   03400 DNA repair and recombination proteins [BR:psom03400]
    113301144
DNA replication proteins [BR:psom03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    113301144
  DNA Replication Termination Factors
   ELG1-RFC complex
    113301144
Chromosome and associated proteins [BR:psom03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    113301144
DNA repair and recombination proteins [BR:psom03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     113301144
  Check point factors
   HRAD17(Rad24)-RFC complex
    113301144
SSDB
Motif
Pfam: Rep_fac_C AAA DNA_pol3_delta2 AAA_14 AAA_22 Mg_chelatase AAA_16 Viral_helicase1 Rad17 RCF1-5-like_lid RuvB_N AAA_11 AAA_24 AAA_5 AAA_25 AAA_assoc_2 AAA_19 nSTAND3 DNAX_ATPase_lid AAA_28 ABC_tran AAA_18 MeaB DNA_pol3_gamma3 AAA_30 IstB_IS21 AAA_3 bpMoxR NTPase_1 AAA_7 RNA_helicase DO-GTPase1
Other DBs
NCBI-GeneID: 113301144
NCBI-ProteinID: XP_026405698
LinkDB
Position
8:complement(18448888..18451542)
AA seq 333 aa
MASSSASSTTLGYEMPWVEKYRPNKVIDIVGNEDAVSRLEIIARDGNMPNLILAGPPGTG
KTTSILALAHELLGPNCKEAVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKIIILD
EADSMTSGAQQALRRTMEIYSNSTRFGLACNMSSKIIEPIQSRCALVRFSRLSDQEILGR
LMVVVQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATFSGFRFVNQENVFKVCDQPHPL
HVKNMVRNILEGNFDDACAALKQLYDMGYSPTDVITTLFRIIKNYDMPEYLKLEFLKETG
FAHMRICDGVGSLLQLCGLLAKFSIVCETAKAM
NT seq 1002 nt   +upstreamnt  +downstreamnt
atggcttcatcatcggcttcatcaacaacccttggttatgagatgccatgggtagagaag
tacagacctaacaaagtcatagacatcgttggtaacgaagatgctgtttcaaggcttgaa
atcatcgctagggatggaaatatgcccaatctcatcttagctggtcctcctggaactgga
aaaactacaagtatattggctcttgcacatgaacttttagggccaaattgtaaggaagct
gttttagagctaaatgcatcagatgacaggggaattgatgttgtgagaaacaaaatcaag
atgtttgctcaaaagaaagtgactttaccaccggggcgtcataagattattattctggac
gaagccgacagcatgacatcaggagcacaacaggctttgaggagaacgatggaaatttat
tcaaactccacgcgttttggtcttgcttgtaatatgtcttcgaaaattattgagcccatt
cagagtagatgtgctttggttcgtttctcaagattgtcggaccaggagatccttggtcgt
cttatggtagtggtccaagctgaaaaggttccttacgtgccggaaggtctagaagccatc
attttcactgcagatggtgatatgagacaggcactgaataacttgcaagctactttcagt
gggtttcgatttgtcaatcaagagaatgtgtttaaggtgtgtgaccagccacacccttta
catgttaagaacatggttcgcaatatactcgaggggaactttgatgatgcatgtgctgct
ttgaagcaactgtatgatatgggctattctccaactgatgtgataacaacccttttcaga
ataattaagaactacgacatgcccgagtatctgaaattagagtttttgaaggagactgga
tttgctcatatgagaatctgtgatggagttggttctttgcttcaactatgtggtcttctt
gctaagttttccatagtatgtgaaacagcaaaagccatgtaa

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