Papaver somniferum (opium poppy): 113302106
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Entry
113302106 CDS
T05758
Name
(RefSeq) regulator of nonsense transcripts 1 homolog
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
psom
Papaver somniferum (opium poppy)
Pathway
psom03013
Nucleocytoplasmic transport
psom03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
psom00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
113302106
03015 mRNA surveillance pathway
113302106
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psom03019
]
113302106
Enzymes [BR:
psom01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
113302106
5.6.2.5 RNA 5'-3' helicase
113302106
Messenger RNA biogenesis [BR:
psom03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
113302106
mRNA cycle factors
Common to processing body (P body) and stress granule
113302106
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
DEAD
SLFN-g3_helicase
Helicase_RecD
UvrD-helicase
NPHP3_N
nSTAND3
ATPase
PhoH
SRP54
AAA_16
AAA_22
AAA_25
Ribosomal_S13_N
AAA
AAA_32
Motif
Other DBs
NCBI-GeneID:
113302106
NCBI-ProteinID:
XP_026406739
LinkDB
All DBs
Position
8:93861241..93871624
Genome browser
AA seq
1286 aa
AA seq
DB search
MAAQTVVNNLYETASQPDTGNDAYTFLEFNTQGDEFDYPEFRELSQPIRASVWSPTPGAP
PSSDSVIVDPVERSSSDLQTETNPVSPVAAALGGSSSKVRGGGGGGSSSSSSNNNNQAVV
DALASGMTGLSFEETGDDENFEYGKGDFTEHACRYCGVQNPACVVRCNVPSCRKWFCNSR
GNTSGSHIVNHLVRAKHKEVCLHKDSPLGETILECYNCGCRNVFLLGFISAKTESVVVLL
CREPCLSVNALKDMNWDLSQWCPLIDDRCFLQWLVKIPSEQEQLRARQISAQQINKVEEL
WKSNPDASFEDLEKPGVDDEPQPVALKYEDAYQYQNVFAPLIKLEADYDKMMKESQSKDN
VTIRWDIGLNKKRIAYFVFPKEDNELRLVPGDELRLRYSGDAAYPAWQSVGHVIKLTAQE
EVALELRASQGVPVDVNHGFSVDFVWKSTSFDRMQGAMKTFAVDETSVSGYIYHHLLGHE
VEVQVVRNTLPRRFGAPGLPELNASQVFAVKSVLQKPVSLIQGPPGTGKTVTSAAIVYHM
AKQGQGQVLVCAPSNVAVDQLAEKISATGLKVVRLCAKSREAVSSPVEHLTLHYQVRHLD
TSEKSELHKLQQLKDEQGELSSSDEKKYKALKRATEREISQSADVICCTCVGAGDPRLAN
FRFRQVLIDESTQSTEPECLIPLVLGVKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFER
LVLLGVKPFRLQVQYRMHPCLSEFPSNSFYEGTLQNGVTINERQSTGIDFPWPVPNRPMF
FYVQMGQEEISASGTSYLNRTEAANVEKIVTTFLRSGVVPSQIGVITPYEGQRAYIVNYM
ARNGALRQQLYKEIEVASVDSFQGREKDFIILSCVRSNEHQGIGFLNDPRRLNVALTRAR
YGIVVLGNPKVLSKQPLWNGLLTHYKEHECLVEGPLNNLKQSMVQFQKPKKIYNDRRLFF
GTGPGVGSNDNFGSSSPNADKRGNRSKGYMPFGPSPSGPHKPAVHPAGFPVPRLPLPPFH
GGPHSQPYAIPTRAAVHGPIGAVPQVPQPGSRGFGAGRGNAGGPIGGHLSHQQGSQQARG
SIGSGFNFPPLDNPNSQSSVGGPLSQTGLMTQMPVQGLSQTFREGFSMGGMSQEFMGDDF
KSQGSHVAYNVADFSTQASQGGYDYVAQGAQTGFPGSFLNQNTQPGYSHLGSGNDFISQD
YMAHGSQGLFTQVGFTDPSADDSSQSHFGVPGHNPLQTQGLMNPLYSQPFTHYNTTQPGN
MQPPQQQQGQGQSSQNHKQQQLHYSG
NT seq
3861 nt
NT seq
+upstream
nt +downstream
nt
atggccgctcaaacggttgtaaacaatctatacgaaacggcatcacaacctgatacaggg
aatgatgcttatacctttctagaattcaatacacagggtgatgaatttgattatcctgaa
tttcgtgaactttcacaaccaataagggcatctgtctggtctcctacacctggtgctcct
ccgtcatcagattctgtaattgtcgatccggttgaaagaagttcttctgatcttcaaact
gaaacaaatcctgtttctcctgttgctgctgctttaggaggaagttcttctaaggttaga
ggtggtggtggtggtggtagtagtagcagcagtagtaataataataaccaggctgtggtt
gatgccttggcatcaggaatgactggtttgagttttgaagaaactggtgatgatgagaat
tttgagtatggtaaaggtgattttacggaacatgcttgtaggtattgtggtgttcagaat
ccagcttgtgttgttaggtgtaatgttccttcctgtagaaaatggttttgcaattctcgt
ggaaacacttcgggttctcatatcgttaatcatctggttcgtgcaaagcacaaggaagtg
tgtcttcataaagatagtccactaggagagacaattcttgaatgttataattgtgggtgc
cgtaatgtgttccttcttggatttatttctgccaaaacagagagtgttgttgttctactc
tgtagagaaccttgtttgagtgtcaatgcattgaaggatatgaactgggacctgagtcag
tggtgcccccttatcgatgatagatgtttcttgcagtggcttgttaagattccttctgag
caagagcagttgagagcacgccagattagtgctcaacaaataaataaggtggaggagctt
tggaagtcaaacccggacgcgtcgtttgaagatcttgagaaacctggagtggatgatgaa
cctcagcctgttgctttgaagtatgaagatgcatatcagtaccaaaatgtatttgctcca
ctaatcaaacttgaggcagattatgataaaatgatgaaagaatcgcaaagcaaagataat
gtcacgattcgatgggatattggtctcaacaagaaacgtattgcgtactttgtatttcca
aaggaagataatgaattgcgacttgtacctggtgatgagttacggcttcgttattctggg
gatgcagcttatccagcgtggcagtctgttgggcatgtgatcaaactaactgctcaagaa
gaagttgcacttgagctccgtgccagtcagggtgttcctgtcgatgtgaaccatggcttc
agtgttgattttgtttggaagagtaccagctttgatcggatgcagggagcaatgaaaact
tttgctgtggatgagacaagtgtcagtgggtatatataccatcatttgttgggccacgaa
gttgaggttcaggttgtccgcaatacactacctcgccgatttggcgcaccaggcctgcca
gaactcaatgcgtctcaagtttttgctgtaaaaagtgtacttcaaaagccagtaagttta
atccaaggtcctcctggcacgggcaaaactgtcacttctgctgccattgtttatcatatg
gcaaaacaaggccaagggcaggtcttggtctgtgctccaagtaatgtggctgtagatcaa
cttgctgaaaagattagtgcaactgggttgaaggttgttcgtctctgtgcaaaatcaaga
gaagctgtgagctctcccgttgagcatttgacactgcattatcaggtccgacatcttgat
acttctgaaaagagtgaacttcacaagcttcagcagctgaaagatgaacaaggagaatta
tcaagtagcgatgagaaaaagtataaggcccttaaacgggcgactgagagggagatatct
cagagtgctgatgtcatctgttgcacatgtgttggtgctggagatcctagactggcaaac
tttaggtttcgtcaggttcttattgatgagtcaactcagtcaactgagccagagtgtcta
attcctttggttctaggagttaaacaggttgttcttgttggtgatcattgtcagcttggt
cccgtaatcatgtgcaagaaggcagctcgtgctggcctggctcaatctctctttgagcgc
cttgtgctcctcggcgtaaaacctttcagactgcaggttcaatatcgaatgcatccatgc
ctctcggagttcccatctaacagcttctacgaaggtacacttcaaaatggagtgaccatt
aatgaaagacaatctactggtattgatttcccttggcccgtgccaaaccgtcccatgttc
ttttatgtgcagatggggcaagaggaaataagcgctagtggaacttcatatttgaatcgt
acagaggctgcaaatgtagaaaagattgtgacaactttcttaaggagtggtgtggttcct
agtcagattggcgttataacaccatatgaaggacagagagcctatattgtgaattacatg
gcaagaaatggtgctctcaggcagcaattatacaaggaaatcgaggtcgctagtgttgat
tcgttccaagggagggaaaaggatttcatcatcttgtcctgtgttaggagcaatgagcat
cagggcattgggttccttaatgatccacgtcggcttaatgttgctctcactcgagctcgt
tatggtatcgtagttttgggaaacccgaaagtattaagcaaacagccattatggaacggc
ttgttgacgcactataaggaacacgaatgcttggtggaggggcctcttaataacttgaaa
cagagtatggttcagtttcaaaaaccgaaaaagatatacaatgaccgcagacttttcttt
ggaactggtcctggagttggttctaatgataatttcggttcatcaagtcccaatgctgat
aagagaggcaatcgttctaaaggttacatgcctttcggaccgtcacctagtggtccccat
aagcctgctgtccatccggcagggtttcctgttccacgccttcctcttccaccttttcat
ggtggtcctcattctcagccctatgctattccaactcgtgctgctgttcatggaccaatt
ggagctgttccccaggttcctcaacctgggagtaggggatttggggctggtcgtggaaat
gctggtggtcctattggggggcatctgtctcaccagcaaggttcacaacaagctcgtggg
agtattggctcaggtttcaatttccctccattggacaaccctaacagtcagtcatctgtg
ggtggtccattatcgcaaactgggcttatgactcagatgccagtgcaagggctcagccag
acattccgtgaaggattttctatgggtggcatgtcacaggaattcatgggtgacgacttt
aagagccaaggatcacatgttgcttacaatgttgctgatttctccacacaggcttctcaa
ggcgggtatgattatgttgcccaaggtgcacaaactggatttcctgggagctttttaaac
caaaatactcagcctggatattcacatttgggttctggaaatgatttcatttctcaggat
tacatggcgcacggatctcaagggctgttcactcaagtgggttttactgatccatcggca
gatgattcttctcagtcccattttggtgttccaggccacaatccacttcagacacagggc
ttaatgaatccactttactcccagcccttcacccattataacactacccagccaggaaat
atgcagcctccccaacagcagcagggtcagggccagagctcacaaaaccataagcagcag
cagctccactacagcggctga
DBGET
integrated database retrieval system
