Papaver somniferum (opium poppy): 113302338
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Entry
113302338 CDS
T05758
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 50-like
KO
K13179
ATP-dependent RNA helicase DDX18/HAS1 [EC:
5.6.2.7
]
Organism
psom
Papaver somniferum (opium poppy)
Brite
KEGG Orthology (KO) [BR:
psom00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
psom03041
]
113302338
03009 Ribosome biogenesis [BR:
psom03009
]
113302338
Enzymes [BR:
psom01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
113302338
Spliceosome [BR:
psom03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
113302338
Ribosome biogenesis [BR:
psom03009
]
Eukaryotic type
90S particles
Helicases
113302338
Pre-60S particles
113302338
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
HTH_CLF_N
SNF2-rel_dom
Motif
Other DBs
NCBI-GeneID:
113302338
NCBI-ProteinID:
XP_026407029
LinkDB
All DBs
Position
8:101844312..101849759
Genome browser
AA seq
737 aa
AA seq
DB search
MLATAPLNLPFSIKTSTATSSPNFNIICSCKFENVGFQFHNKKPRGVIVRSSGYIRKDLD
TPGAYQLIDDETGEKVIVWGDDDSPVPSKETLKWKPNQTRAKPTSNQEEVFKNKKKSMKN
ITGENGGYVKTATARDISTQSDDSPAVRRNIAGSFGKLKAQRVSALIRKSSLTKETNAKV
GHGKEVLRRDTPYDGSRFDDSERRFVKRETSVGATQQRSSISRVSRQREMDDRVPDAETA
VSAREQEFNPKRIMRNIMRDKGTMSEPHDDDYNEVDESAVSVPRRASDASLRGWGGSVSV
YDAAYDTTRHYLKHPKKISVGHGFFSRKTFQDLGCSDDVIESLRGQNYSRPSHIQAMAFA
PVSEGKTCIIADQSGSGKTLAYLAPVLQQLRQEELQGLGKSSPGSPWVVILVPTAELGSQ
VLSACRSMSKFGVPFRSMVATGGFRQKTQLESLQQDMDVLIATPGRFLYLLKEGFLQLTN
LKCAVLDEVDILFADEHFQQVLHSFLNFAPVTTQYLFVTATLPVEIYNKLVESFPDAEVI
MGPGIHRTSSRLEEVLLDCSGDDRMEKTPETAFENKKSALLRLLEGNLVFRTIIFCNKIE
TCRKVENILNRYDRKGVRIRGLPFHSALTQEARLANMKEFLNPQSPEDSLFLICTDRASR
GIDFMGGVDHVILFDFPRDPSEYVRRVGRTARGAGGGRGKAFVFVVGKQVSLAQRIVERN
LKGHPLHDVPNAYSPDW
NT seq
2214 nt
NT seq
+upstream
nt +downstream
nt
atgttagctacagctccattaaacttacctttttctatcaaaacaagcaccgcaacatct
tcacccaatttcaacattatctgttcatgtaaattcgaaaatgttggatttcaatttcat
aataaaaaacccagaggggttatagttaggtcatctggttatattcgaaaggatttagac
acaccaggtgcttatcaattaattgacgatgaaactggagaaaaagttattgtttggggt
gatgatgattctcctgttccttctaaagaaactctcaaatggaagcctaatcagactaga
gccaaacctacttccaatcaagaagaagttttcaagaacaaaaagaagagtatgaaaaat
attactggtgaaaatggagggtatgttaagactgctactgctcgagatatcagtacccaa
agtgatgattcgccagcagttcggaggaacattgcaggaagctttggtaagttgaaggca
cagagagtaagtgcgttaataagaaaatcatcacttactaaggaaacaaatgcgaaagtt
ggtcatgggaaagaagttctaagacgtgatacgccttatgatgggtcgcgttttgatgat
tctgagcgtcgatttgtaaaaagagagacgagtgttggtgcgactcaacaaagaagtagc
atatcaagggtatcgcggcaaagggaaatggatgatagagtgccagatgctgagactgcg
gtaagtgcgagagagcaggaatttaatcccaaacgcattatgagaaatattatgagggat
aaaggtacaatgtcagaacctcatgatgatgattacaatgaagtggatgaatcagctgta
tcagttccgaggcgtgcttctgatgcctccttaagaggatggggtggcagtgtgtctgtc
tatgatgctgcatatgatacgacgagacactatttgaagcatcctaagaagatttccgtt
ggacatggttttttcagccgtaaaacttttcaagatcttgggtgcagcgatgatgtcatt
gaatctttgaggggtcagaattactctcgcccttcacatattcaggccatggcttttgcg
cctgttagtgagggaaaaacttgcatcatagctgatcaaagtgggtcaggaaagacgctt
gcgtatctggcaccagtcttacagcagctccgacaagaggagctacaaggacttggtaaa
tcctctcctggaagtccgtgggtagtaatattggtaccaactgctgagttgggttctcaa
gtactaagtgcttgccgatccatgtcgaaatttggggttcctttcaggtctatggtagca
acaggtggttttcgacagaaaacacagttagaaagccttcaacaagatatggatgttctc
atagcaacacctggtcgtttcctttacctgcttaaagaaggtttcttgcagctaacaaac
cttaaatgtgctgtattagatgaggtcgatatactattcgctgatgaacactttcagcaa
gtgttgcatagctttctcaattttgcacccgttactacgcagtatctctttgtcactgca
actttaccagtcgaaatatacaacaaacttgttgaaagttttcctgatgctgaagtgatc
atgggacctggcatccaccggacaagctctagacttgaagaggtacttctagattgcagt
ggagatgatcgaatggagaaaactccagaaacagcatttgagaacaagaaatctgctctt
ttgcggcttttagagggaaatctggttttcaggactattattttttgcaacaagattgaa
acgtgcagaaaagttgagaatattttaaatcgatatgatagaaaaggagttcgtatcagg
ggtttgccattccactctgctttaactcaagaggcacgtctcgctaatatgaaagaattt
ctcaatcctcagtctcctgaagattctttgtttctgatttgcacagacagagcttcacgg
ggtattgatttcatgggaggagtagatcacgttatactgttcgacttcccacgggatcct
agcgaatatgtacgtcgtgttgggagaactgcaaggggtgctggaggaggcaggggaaaa
gctttcgttttcgttgttggaaaacaggtttctcttgcacaaagaatagttgaaagaaac
ttgaaagggcatccattacatgatgttcctaatgcatatagtccagactggtga
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