Papaver somniferum (opium poppy): 113302802
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Entry
113302802 CDS
T05758
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH4
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
psom
Papaver somniferum (opium poppy)
Pathway
psom03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
psom00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
113302802
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
psom03041
]
113302802
Enzymes [BR:
psom01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
113302802
Spliceosome [BR:
psom03041
]
Complex C
Other components
Step II factors
113302802
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_N
DEAD
AAA_22
HA2_C
AAA_19
AAA_30
ABC_tran
ATPase_2
nSTAND3
SLFN-g3_helicase
NPHP3_N
AAA_16
Helicase_RecD
T2SSE
AAA_29
SRP54
Flavi_DEAD
NB-ARC
Dynamin_N
Sigma54_activ_2
nSTAND1
DAP3
Sigma54_activat
FtsK_SpoIIIE
Motif
Other DBs
NCBI-GeneID:
113302802
NCBI-ProteinID:
XP_026407544
LinkDB
All DBs
Position
8:complement(120246353..120253749)
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AA seq
701 aa
AA seq
DB search
MAVAVLPILQFEDKIIETVEQNSVVVVIGETGSGKSTQLSQILHRRGYTKSGIIAVTQPR
RVAAVSVARRVAQELNVRLGEEVGYAIRFEDRTTEKTKIKYLTDGVLLRESLSDPELKQY
SVIILDEAHERSLNTDILLGLVKRLIKMRSSNLKVLITSATLDGTKVSEFFSNCPVLTVP
GKLFPVEILYSSERPTSYLDACLNKALNIHTRQPEGDVLIFMTGQDDIDKCVKKLEERVQ
SLEEGCCMDAIILPLHGSLPPEMQVRVFSPPPPNCRRFIVATNIAETSLTVDGVVYVIDS
GYVKQRQYNPSTGMYSLDIVQISKVQANQRAGRAGRTCPGKCYRLYPSDIYHEDFAEVTI
PEIQRSSLAGSVLYLKSLDLPDIDILKFDFLDPPSRDSLEGALKQLYLINAIDESGTITQ
IGRTMSELPLEPSLSRTLIEANEYGSLSQALTVVAMLSAETTLLPTQSKSIDKKRKQAPS
DLPDGFGWGDHIQLLQVYEDWDRANYDPRWCTDNALQVRGMMFTKDVRKQLSQIMQKISK
GPLDVQTNRRRRESRQDYKILRRALCVGYASQLAERMIHHNGYRTLGFKPQLVQVHPSSV
LKADEDGKLPNYVVYHELITTSRPFMRNVCAVEMSWVMPILQKLEKIDVNKLSGGFATPE
ESLQEQVSDLPKKEADIIDPLHRNNQILAARERFLARKLKK
NT seq
2106 nt
NT seq
+upstream
nt +downstream
nt
atggcagtagcagttcttccgattcttcaattcgaagataaaattatcgaaacagttgaa
caaaattcagtagtagttgtaataggagagactggttcaggtaaaagtacccaactctct
caaatcctacatcgaagagggtacacaaaatctggaattatcgcagttactcaacctcgc
agagtcgctgctgtctccgttgccagacgagtagcccaagaactgaatgtgcggttaggc
gaggaagttgggtacgctattcgatttgaggatagaacaacggagaagactaagattaaa
tatcttactgatggagttttactccgtgaaagcctttcagatccagagctaaagcaatat
tcagttatcatattggatgaggctcatgaaaggagtctaaacactgacattttgttggga
ttggtgaaacgattgataaagatgcggtcatctaatttaaaggttctgatcacttcagca
actctggatggtaccaaggtatcggagttcttctccaattgtcctgttctaactgtccct
gggaagttgttccctgtggagatattgtacagcagcgagcgccctacaagctatcttgat
gcttgcttaaataaggctctgaatatacacacccgacaaccagaaggagatgtgttaata
ttcatgacagggcaggatgatatcgacaaatgcgttaaaaagttggaggagagagttcaa
agtttagaagaaggatgctgtatggatgctataattcttccacttcatggttctttacca
cctgaaatgcaggtgcgtgtgttcagtccgcccccaccaaactgtaggcggttcattgtt
gccacaaacattgctgagacttctttaacagtagatggtgtagtgtacgttattgattct
ggttatgtaaagcaaaggcaatacaacccatcaacgggcatgtactctcttgacattgtc
cagatcagcaaagtgcaagctaatcagcgtgcagggagagctggaagaacttgtcctgga
aaatgttatcggctgtacccctcggatatataccatgaggattttgccgaagtcacgatc
cctgagatacaacgttcttctcttgctggaagtgtgctttatttgaaatcacttgacctt
cctgatatcgatatcctcaaatttgatttcctcgatccaccctcacgtgattctttagaa
ggcgctctgaaacaattatatctaatcaatgcaattgatgaaagtggaactattacacaa
attggaaggacaatgtctgagttgccactagaaccttcactttcgagaaccctgatcgag
gcaaatgagtatggttccttgtcccaggcattgactgtggtagccatgttatcagcagaa
acgacattacttcccactcagagtaagagtattgacaagaagaggaaacaggctccttca
gatttaccagacggttttggatggggtgatcacatccagttgctccaagtgtacgaggac
tgggatcgagccaactatgatccacgttggtgcacagataatgcattgcaggtacgaggg
atgatgttcaccaaggatgtcaggaaacaattgtctcaaataatgcagaaaatatcaaaa
ggaccactggatgtgcaaacaaatcgaagacgacgagaaagccgacaagattataaaatc
ttaaggagggctttatgtgtaggttatgcaagccagttggccgagcgaatgattcaccat
aatggttatagaacccttggttttaaaccacagcttgttcaggtacacccatcgtcggtt
ttgaaggcagatgaggatgggaagctacccaactatgtggtgtaccatgaactcattact
acctctcgtcctttcatgcgcaatgtttgtgcagtggagatgtcgtgggtcatgccgatc
ttacaaaaacttgagaaaatagatgtaaacaagctcagtggtggatttgctactcccgaa
gaatctttgcaggaacaagtctcagatcttccaaagaaagaagctgatattatcgatcca
cttcaccgcaacaaccaaattctagcagcccgagaacgttttcttgctcgaaagttgaag
aagtaa
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