Papaver somniferum (opium poppy): 113303031
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Entry
113303031 CDS
T05758
Name
(RefSeq) DNA mismatch repair protein MSH2-like
KO
K08735
DNA mismatch repair protein MSH2
Organism
psom
Papaver somniferum (opium poppy)
Pathway
psom03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
psom00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
113303031
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
psom03400
]
113303031
DNA repair and recombination proteins [BR:
psom03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
113303031
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_IV
MutS_I
MutS_II
DUF2987
Motif
Other DBs
NCBI-GeneID:
113303031
NCBI-ProteinID:
XP_026407804
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Position
8:129605511..129613125
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AA seq
942 aa
AA seq
DB search
MDESLQDQNKLPELKLDSKQAQGFISFFKSLTKDPRAIRFFDRRDYYTAHGENATFIAKT
YYYTTTALRQLGSGSDGISSVSVNRNMFETIVRDLLLERTDHTLQLYEGSGSNWRLSKSG
TPGNLGSFEDVLFANNEMQDSPAIVALYPNFRENECTIGLSYVDLSKRVLGLAEFVDDSQ
FTNVESALVALGCKECLFPLESGKSIEIKSLHDALSRCGVLLSERKKTEFKSRDLAQDLS
RLIKGSIEPVRDLLSGMDYASGSLGALLSYAELLADESNYGNFTIQKYNLDSYMRLDSAA
MRALNVLESKTDANKNFSLFGLMNRTCTAGMGKRLLNRWLKQPLLDVTEINSRLDLVQAF
VEDTALRQDLRQHLRRISDVERLMHNLEKKRAGLQHIIKLYQSSIRLPYIKSALERYDGQ
FSPLIKEKYLDQLECYIDDNHLNKFVALVETAVDLEQLENGEYMISPGYDQKLCELKSER
DAVEQKIHNLHKETANDLDLPLDKALKLDKGTQFGHVFRITKKEEPKVRKKLATQFIILE
TRKDGVKFTNSKLKKLGDQYQKVLEEYTSCQKEIVARVVRTAATFSEVFDTLAGILSELD
VLLSFADLATSCPTPYARPNITAADEGDIVLEGSRHPCVEAQDGVNFIPNDCNLIRGKSW
FQIITGPNMGGKSTFIRQVGVNVLMAQVGCFVPCDKAHISVRDCIFARVGAGDCQLRGVS
TFMQEMLETASILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVAVTKAPTLFATH
FHELTALAHENAYSELSKKPNQGVANYHVSAHIDSESHKLTMLYKVEQGACDQSFGIHVA
EFANFPESVVALAREKAAELEDFSPDLIISNHSKEEVEPKRKRECDSEDMSRGAARACRF
LQEFTALPFEQMESKQAFQHISKLRSDLEKDASDSSWLQQFF
NT seq
2829 nt
NT seq
+upstream
nt +downstream
nt
atggatgaaagcttgcaggatcagaataagctgccggaactaaaattagattctaaacaa
gctcaagggtttatctcatttttcaaaagcctaaccaaagatcctagagctattaggttt
tttgatcgtcgggattattatactgcacatggtgaaaatgcaacttttatagcaaagaca
tactactacactactactgctctgcgacaacttggtagtggctctgatggtatttccagt
gtgagcgtcaacaggaatatgtttgaaaccattgtccgtgatcttctattggaaaggaca
gaccatacactacagctctatgagggtagtggttcaaattggcggttatcaaaaagtgga
acccccggaaacctgggcagttttgaagatgttttatttgccaacaatgagatgcaagat
tctcctgcgatagttgcgttgtatccaaactttcgcgagaatgaatgcactatagggttg
agctatgttgatctgtctaagagagtacttggattggcagaatttgtggacgacagccag
ttcacaaatgtcgaatcagctctagttgctcttggatgtaaagaatgcctctttccactg
gagagtggaaaatctattgaaattaaaagcttgcatgatgcgttgtctagatgtggtgtc
cttcttagtgagagaaagaaaactgaatttaagtcgagggatttggcgcaggaccttagt
cgtctcatcaagggctcaattgaacctgttcgtgatttactctctggtatggactatgca
tctgggtctcttggagcattgctgtcctatgcagaattacttgcagatgagagtaattat
ggtaactttactatccaaaagtacaatcttgacagctacatgaggttagattctgctgct
atgagagcattaaatgttttggagagcaaaacagatgcaaacaagaatttcagcttgttt
ggtttaatgaatagaacatgtactgctggtatgggaaaaaggttgttaaataggtggttg
aaacaacctttactagatgtaactgaaatcaactccaggttggatttggtccaggcgttt
gtcgaagatactgctcttcgccaagatctgagacagcatttgagaaggatttcagatgtt
gagcggctaatgcataaccttgagaaaaaaagagctggtttgcagcacattataaagctt
tatcagtcaagcatcagacttccgtatattaaaagtgctctggaacgatatgatggccaa
ttttcaccactgataaaagagaagtatcttgatcaacttgagtgttatattgatgataat
cacttgaataagtttgttgctcttgttgaaaccgctgttgatcttgagcaacttgagaat
ggagagtacatgatatcacctggttatgatcaaaagctatgtgaactaaaatctgaacgg
gatgcagtagagcagaagatacataatttacacaaagaaactgctaatgatcttgatctt
cctctagataaggctttgaagttggataaagggacacagtttggacatgttttcaggatt
acaaagaaggaagagcctaaagttaggaagaagctagcaacacagtttataatccttgaa
actcgaaaggacggggtaaagtttacaaactcaaagcttaaaaagttaggggatcagtac
caaaaggtactagaagagtatacaagctgtcaaaaagagatcgttgctcgagtggtccga
actgcagcgacgttttctgaggtttttgatacattagctgggattctttctgaactagat
gtcttgcttagctttgctgaccttgccactagttgtccaactccatacgcaagaccaaac
ataactgctgcggatgaaggagatattgtactagaagggagtagacacccttgtgttgag
gctcaagatggagtaaattttattccaaatgattgtaatctgattaggggtaaaagctgg
tttcaaatcattacgggccctaacatgggtggaaaatctacatttattcggcaggttggt
gtgaatgttttgatggcacaagttggctgctttgttccttgtgacaaagcacacattagt
gttcgtgactgcatttttgctcgtgttggtgctggtgattgccagcttcgtggagtctcc
actttcatgcaagaaatgctagaaactgcttcgatattgaaaggagcaacagacaggtcg
cttataattattgacgagttggggcgtgggacatcaacttacgatggatttggtttagct
tgggcaatatgtgagcaccttgttgcagtgacaaaagcaccaactctatttgcaactcac
tttcacgaactgactgcgttagctcatgaaaatgcctacagtgagctatctaaaaagccc
aaccagggcgtggcaaattaccatgttagtgcgcatattgattcggaaagtcacaagctg
accatgctttataaggttgaacaaggagcttgtgatcaaagttttggtattcatgtagca
gagtttgcaaatttccctgaaagtgttgttgcccttgctagagaaaaggctgcagagttg
gaagatttttcaccagatttgatcatttcaaaccattcaaaagaagaggttgaacctaaa
cgaaagcgtgagtgtgattccgaggacatgtctagaggagctgctagagcttgtcgattc
ttgcaggaatttactgctctgccatttgagcaaatggagtcgaagcaggcctttcagcat
atcagcaaattgagaagcgacttagaaaaggatgcatctgactccagttggctccagcaa
ttcttctag
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