Papaver somniferum (opium poppy): 113303122
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Entry
113303122 CDS
T05758
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3-like
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
psom
Papaver somniferum (opium poppy)
Pathway
psom03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psom00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
113303122
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psom03019
]
113303122
03012 Translation factors [BR:
psom03012
]
113303122
Enzymes [BR:
psom01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
113303122
Messenger RNA biogenesis [BR:
psom03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
113303122
Translation factors [BR:
psom03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
113303122
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
dsrm
AAA_22
HA2_N
AAA_19
T2SSE
nSTAND3
AAA_30
AAA_16
ATPase
NPHP3_N
PhoH
Dicer_dimer
Motif
Other DBs
NCBI-GeneID:
113303122
NCBI-ProteinID:
XP_026407902
LinkDB
All DBs
Position
8:134160135..134173150
Genome browser
AA seq
1240 aa
AA seq
DB search
MRILTGGGGSGGYLKINPHNFSLSMSGSMRTTVFHCFPLRSYPKNPNKYVCKPLKISNSL
RFSDTCTTTTTTSRRWLRPSSSFAASSSSSSRSFLGLGYNQRNKNDKGLVLSFAYTTSSN
RRHYSQPHNLHQHKQSFGYGRYAYDDYSEDEFGGKAIAKSQSHKGASSPENIDEWKWKLT
MLIRNNNEHELVSREKKDRRDFDQLSALATRMGLYSRQYSRVLVFSKTPLPNYRSDLDDK
RPQREVVISSDLQRRVEALLNGYLSQKPRVLSLPKSSSNCESSTLNEDFVDIKAPTSVVM
ERILRRRSLHFRDKQHAWQESAEGKRMIDFRKNLPAYKEKDALLRAISQNQVVVVSGETG
CGKTTQLPQYILESEIEAANGSACSIICTQPRRISAMAVSERVAAERGEKLGETVGYKVR
LEGQRGRDTRLLFCTTGILLRRLLHDKSLKGVTHVIVDEIHERGMNEDFLLIILRDLLPR
RPELRLILMSATLNAELFSTYFSRSPVIYIPGFTYPVRTLFLESVLETVQYRLTPYNQID
EYGQDKVWKKQKQLLGKKKSQIVSVVEDTLEAANFNEYSRQTQESLSCWNPDSLGFNLIE
HVLCHICKKEKPGAVLVFMTGWDDINALKDQLQAHPLLGDPSRILLLACHGSMATSEQRL
IFDKPEDGVRKIVLATNMAETSITINDAVFVVDCGKAKETSYDALNNTPCLLPSWISKAA
ARQRRGRAGRVQPGECYHLYPKCVYESFVDYQLPELLRTPLQSLCLQIKSLQLGSISEFL
SRALQSPEPLSVQNAVEYLKIVGALDEKENLTTLGGYLSMLPVEPKLGKMLILGAIFKCL
DPILTVVAGLSSRDPFLAPFDKRDLADSAKAQFAGRDFSDHLALVRAFKGWKDAEKEQAG
YEYCWKNFLSSQTLKGINSLSKQFFYLLKDTGLVDNDPATWNMWSHDEHLIRAIICAGLY
PGICSVVNKDKSVSLKTLEDGEVNLYSNSANAREPKIPYPWLVFNEKVKVNSVFLRESTA
ISDSLILLFGGSISRGGLDGHLKMLGGYLEFFMKPALAETYLILKRELDELIHNKLLNPE
IDINTHKHLLSAVRLLLSQDQCDGKFVFGRKVPIKHSKVTSATSKSPKGMLSRKGSLIGG
GGDNCKNQLQTLLARGGRHHVPVYSTKQLKNNQFRAMVEFNGMQFVGKPCSSKKLAEKDA
AAEALQWLTGETGTPTGWEESDDHKSIMQKLKMKKHGRAW
NT seq
3723 nt
NT seq
+upstream
nt +downstream
nt
atgcgtatcctgacgggcggcggcggtagtggtggttatttaaaaatcaatccgcataat
ttctcgttgtctatgagtgggagtatgagaaccactgttttccattgcttccctcttcgt
tcttaccctaaaaaccctaacaaatatgtctgtaaaccactcaaaatctccaactcatta
agattttccgatacttgtactaccaccaccaccacaagtcgccgttggctgagaccttct
tcctcattcgctgcttcttcgtcttcttctagtaggtcttttttggggttaggctataat
cagaggaataaaaatgacaagggtttggttttgagttttgcttacactactagtagtaat
cgtcgtcattattcccagcctcacaacttacaccaacataagcagtccttcgggtatggc
cgttatgcttatgatgattactcagaggatgagtttggcggtaaagcaattgctaaatca
caatcccacaagggtgcatcctctcctgagaacattgatgagtggaaatggaagttaact
atgctcattcgcaataacaatgaacacgagttggtgtcaagagaaaagaaggacagacga
gattttgaccaactttcagcattggcaactagaatgggattgtatagccgacagtactct
agagttcttgtcttcagtaaaaccccattgccaaattacagatcagatctggatgataag
cgtcctcagagggaggtagttatatcttctgatttgcaaagaagagtggaggctctactt
aacggatacctttctcaaaagcctcgggttctttccttaccaaaatcaagtagcaattgt
gaaagtagtactctgaatgaagacttcgttgacattaaggcgccaaccagtgttgttatg
gagagaattcttagaaggagaagtttgcattttcgtgataagcaacatgcctggcaggaa
tctgccgaaggtaaaagaatgatagattttcgtaaaaatctccctgcttacaaagagaaa
gatgcattgttgagagcaatttcccaaaatcaggtggtggttgtgtctggtgaaactggt
tgtggtaagaccacccagcttccccagtatatcttagaatctgagatagaagctgcaaat
ggatctgcctgtagtataatctgtacgcagcctcgtcgaatatctgctatggcagtttct
gaaagagttgctgcagagaggggtgaaaaattgggtgaaactgttggctataaagttcgt
ttggaaggtcagagagggagggatactcgccttctgttttgcaccacaggcattctattg
aggagattactgcatgacaaaagtttaaaaggtgttacccatgttattgtggatgagatt
catgaacgtggaatgaatgaagactttttgcttatcatactaagggaccttcttccacgg
cgtccagaactgaggcttattttgatgagtgcaaccttgaatgcagagctcttttcgacc
tactttagcaggtcaccagtgatttatattccgggtttcacatatccagttagaacactt
tttctggagagtgttctagagacggttcagtataggttaacaccctataaccaaattgat
gagtacggtcaagataaggtctggaagaagcagaaacaacttcttggaaagaagaagagt
caaatagtatctgttgttgaggatacccttgaagcagcaaatttcaatgagtatagccga
cagactcaggaatctctgtcttgttggaatcctgattcgttagggtttaatctcatagaa
catgttttgtgccatatatgcaagaaagaaaagcctggtgctgttttggtatttatgact
gggtgggatgacattaatgctctgaaggatcagctccaagcacaccctcttttaggagat
cctagcaggattttgttgcttgcatgccatggatcaatggctacctcggaacagaggtta
atatttgacaaacctgaagacggagtgaggaaaatagtgcttgctactaatatggctgaa
accagtatcacaattaatgatgctgtttttgttgttgattgtggaaaagcaaaagaaaca
tcctatgatgcattgaacaacactccttgtttactgccttcttggatctctaaggctgct
gctcgacagagaagaggaagagctgggcgtgttcaacctggcgagtgttaccatctttat
ccaaaatgtgtatatgagagttttgtggattaccaattaccagaacttttacggacacct
ctgcaatctctttgtttacaaattaaaagcttacagcttggaagcatttcagaattcttg
tctagggccttgcagtctccagaaccactatcggttcaaaacgctgttgaatatttgaaa
atagttggggctttagacgagaaggaaaatctgactactttgggtggctacttgtcaatg
cttcctgtggagcccaaacttggaaagatgctcattttgggtgctatctttaagtgtctg
gaccctatactgactgtggttgctggtttaagttctagagatccattcttagcaccattt
gacaaaagagatcttgcggactcggccaaagcccaatttgctggaagggattttagcgac
catcttgcactggtccgagcgttcaagggctggaaggatgccgaaaaagagcaggctggg
tatgaatactgctggaagaattttctttcgtcacagacccttaaaggtattaattccctt
agtaagcagttcttttacttactcaaggataccggcctggttgataatgacccagcaact
tggaatatgtggagtcacgacgagcatcttattagagctatcatttgtgctggactatac
cctggaatttgctccgtcgtgaacaaggacaagagtgtatcattgaagacattggaggat
ggtgaggtcaacctttactccaactctgctaatgcccgagaaccgaaaattccatacccg
tggctagttttcaacgagaaggtgaaagtgaactctgtttttcttcgggaatcaacagcc
atttctgattccttgattctactatttggaggaagcatatccagagggggacttgatgga
cacctgaaaatgctgggaggatacttggaattcttcatgaaacctgccttagcagaaaca
tatctgattctgaaaagagaacttgatgagctgattcataacaaactactgaatcccgag
atagacattaacacgcacaaacatctcctatcagcagtacgcttgttgctctcgcaggac
cagtgtgatggtaagtttgttttcggcaggaaagttccgataaagcactcaaaagtaact
agtgcaacgtcaaaatcaccaaaagggatgctttcaagaaagggaagcttgataggtggt
ggtggggataattgcaaaaaccagttgcaaacactgcttgcacgtgggggacgacatcac
gttcctgtttacagcaccaagcaactaaagaacaaccagttcagagccatggtggagttc
aatgggatgcagtttgtcgggaagccttgcagcagcaagaagctggcagagaaagatgca
gcagctgaggccttgcagtggttaactggtgagactggcactccaacaggttgggaagaa
agtgatgatcacaagtcaataatgcagaaactcaaaatgaaaaaacatggaagggcatgg
tga
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