Papaver somniferum (opium poppy): 113303133
Help
Entry
113303133 CDS
T05758
Name
(RefSeq) THO complex subunit 2-like isoform X1
KO
K12879
THO complex subunit 2
Organism
psom
Papaver somniferum (opium poppy)
Pathway
psom03013
Nucleocytoplasmic transport
psom03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
psom00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
113303133
09122 Translation
03013 Nucleocytoplasmic transport
113303133
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psom03019
]
113303133
03041 Spliceosome [BR:
psom03041
]
113303133
Messenger RNA biogenesis [BR:
psom03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
113303133
Spliceosome [BR:
psom03041
]
Complex C
Other components
EJC/TREX
113303133
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
113303133
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tho2
THOC2_N
Thoc2
Motif
Other DBs
NCBI-GeneID:
113303133
NCBI-ProteinID:
XP_026407917
LinkDB
All DBs
Position
8:complement(135116357..135134652)
Genome browser
AA seq
1861 aa
AA seq
DB search
MSLPPIECKFITEECLREWKNGNTNFKLPDSVPMLRFLYELCWTMVFGDLPIQKCKVALD
SVEFSDKTTNEEMSSVFADIVTQMSQDLTMPGENRSRLITVAKWLVESALVPLRLFQERC
EEEFLWESEMIKIKAPDLKAKEVRVNTRLLYQQTKFNLLREESEGYAKLVTLLCQSGAEA
LSQNASGATISTIKSLIGHFDLDPNRVFDIVLECFELQPDNHLFLDLIPIFPKSHASQIL
GFKFQYYQRMDVMSPVPSGLYQLAAALVKADFINLDSIYSHLLPKDEDAFELYDSFSAKR
FDEAHKIGKINLAATGKDLMEDEKQGDVTVDLYTALDMESSAVEERSPELVNNQSLGLLN
GFLSVDDWYHAHILFDRLSPLNPVAHDQICKGLFRIIEKSISSAYAAVRQTDHQNLVTSS
ASGYDFSEATDGTTPKTSFIHLPKELFQMLASAGPYLYRNTLLLQKVCRVLRGYYLSALE
LVNCSGGPVSLASTTAGIRDPNQHLRVAKAKVEDALGTCILPSLQLIPANPAVGQEIWEL
MCLLPYEARYHLYGEWEKENERIPMVLAARQTAKLDTRRILKRLAKENLKQLGRMVAKLA
HANPMTVLRTIVHQIEAYRDMIAPVVDAFKYLTQLEYDILEYVVIERLAQGGRDKLKDDG
VNLCDWLQSLASFWGHLCKKYPSMELRGLFQYLVNQLKKGKGIELVLLQELIQQMANVQY
TENMTEEQLDAMAGSETLRYQATAFGMTRNNKALVRSTNRLRDSLLPKDEPKLALPLLLL
IAQHRALVVINADAPYIKMVSEQFDRCHGTLLQYVEFLNSALTPTTAYAQLIPPLEDLVH
KYHLDPEVAFLIYRPVMRLFKCASGSEPDVFWPCNNIKETSMSNTQSESSIPTTELVLDL
GYPRKPIMWSELLDTVKEVLPSKAWNSLSPDLYATFWGLTLYDLYVPKSRYDSEIAKQHA
ALKALEELSDNSSSAITKRKKDKERIQELLDRLTHELRKHEENAASVRQRLAREKDKWLS
SCPDTLKINMEFLQRCIFPRCIFSMLDAVYCAQFVRTLHSLGTPFFNTVNHIDVLICKTL
QPMICCCTEYEAGRLGRFLFETLEMAYHWKKKESTYERECGNMPGFAVYYRYPNSQRVTY
GQFVRVHWKWSCRITRLLIQCLESNEYMEIRNALIMLTKISSVFPVTRKSGINLEKRVAK
IKGDEREDLKVLATGVAAALASRKSFWVTDEEFCMGYVDLKPAAVTASKPLGVTVPNGSS
LKAPQMESAVMKNSTIAGQLNDSGNLNKDPILRARPLDGRLDRTESITVPKSDPEQPKLK
GGSLTNGLEIQCVSTVAVPSGMIQKHTDDPTKGQCDETMAKVAQKPGDSELRATIKRSIG
APLTKQSKHDGIKDENKSVKPVTRHASPLVTSSSERDLPAHPADGRQSAPSSTATTNGNT
VPLSSKVSKAEGGATRPSEPRVSAGKEIDDVEASKTANLSSFPEDSLTASKSMDKQQKRA
IPSEELDRLSKRRKDNNVRDGDGEGRFSDRDRSMDARFPHADVDKTGIDDQGLSRATEKL
LDRSKEKGSERYDRDHRERLERPDKSIGDEVLSERPRDRSMERHGRERSIERVHDRNFDR
VEKLKDDRYKDDRSKLRYSEAPLEKSHIDDRDRFNRQSLPPPPPLPSHMVPQSVSGSRRD
EDADRRVSNTRHMQRLSPRHEEKDRRRSEEISLASDDAKRRREEDFRERKRDERDGSAIK
VEEREKVNIAKDDLDTNAASKRRKLKRDHLSSSDVSEYPMGVQPLPSASVSVSQSLYDGR
ERAERKVSAIQRAGFLEEPSPRMHGKEAANKITRRDSEQLYDREWDDDKRLRPEQKRRHR
K
NT seq
5586 nt
NT seq
+upstream
nt +downstream
nt
atgagccttccgcctatagaatgtaaattcatcacagaagagtgtcttcgcgaatggaag
aatggaaacactaacttcaagctaccagactcggtgccgatgcttcgatttctgtatgag
ctttgttggactatggtctttggagacttgcctattcagaagtgtaaagtagcattagat
tcggttgaattttccgacaagacaacaaatgaagagatgagttcagtttttgcagatatt
gtgactcagatgtctcaagatcttacaatgcctggggagaaccgttcgcgtcttattaca
gtggccaagtggctggtggagtctgcgttggttccattgaggcttttccaggagcgttgt
gaggaagaattcctctgggaatctgaaatgatcaagataaaggcaccagatctgaaggcc
aaggaggttagagtaaacacacggcttctttaccagcaaacaaaattcaaccttcttcgg
gaggagagcgaggggtatgcaaaactggtaacccttctttgtcaaagtggtgccgaggct
ttatcacagaatgcatcgggagcaactatcagcacaattaagtcattaattggacatttt
gatctcgatccaaatcgcgtgttcgatatcgtactggagtgctttgaactacagccggac
aatcaccttttcttagacttgatacctatatttcccaagtcccatgcttctcaaatattg
gggttcaagtttcagtattatcaacgtatggatgtgatgagccctgttccatcggggctt
tatcagcttgcagctgcgcttgttaaagcagacttcattaatcttgatagcatatattcg
cacttacttcctaaggacgaagatgcttttgaactctatgactcgttctcagcaaagcgt
tttgatgaggctcacaaaattggcaaaataaatctggctgctactggtaaggacctgatg
gaggatgagaagcaaggtgatgtaacagtagatctttatactgccttggacatggaaagc
tctgctgttgaagaacgttcccctgagcttgtaaataatcagagtttgggcctgcttaat
ggatttctttctgtagatgactggtatcatgcacacatcctatttgatcgtctctcccct
ctcaatcctgtggcacatgatcagatctgtaagggcttgtttaggattattgaaaaatca
atctcgtccgcctatgctgctgtccgccaaacagatcatcaaaatctcgtcacctcctct
gcttctggttacgatttctcagaagctacagatggaacaacgccaaagacatcatttatt
catcttcccaaggagctatttcagatgcttgcttctgctggaccttatctttaccgtaac
actctactgctacaaaaggtttgtagagtattgaggggctattacctatccgcattggaa
ctagtgaattgcagtggaggaccagtttctcttgcatctacgactgctgggattagagat
cctaatcagcacttaagagttgctaaagcaaaagttgaggatgctcttggtacatgcata
cttccttcattacagttaatacccgcaaatcctgcagtgggccaggaaatatgggaatta
atgtgtcttctgccatatgaggcgcgttatcatttgtatggtgaatgggaaaaagaaaat
gagcgcattccaatggttttggctgcaagacaaacggcaaagttggatacacggagaatc
ttgaaacggcttgcgaaagaaaatctcaagcaactaggtcgaatggtggcaaaacttgct
catgccaatcctatgactgtattgcggacgattgttcatcagattgaggcatatagggat
atgatcgcacctgttgtagatgctttcaagtacttgacacagctggaatacgatattttg
gagtatgtagtaattgaaaggttggcacaaggtgggcgcgataaactaaaagatgatggt
gttaatttgtgcgattggcttcagtctttggcttccttttggggacatttgtgtaagaag
tacccttcaatggaattaaggggtcttttccagtaccttgttaatcagctgaaaaagggg
aagggaattgagcttgtcctcttgcaggagcttatccagcaaatggcaaatgttcagtat
acagagaatatgaccgaggaacaactggatgcaatggcagggagcgaaacactacgctat
caggctactgcattcggaatgaccaggaacaataaggcattggttagatctaccaacagg
ctaagggactcgctgcttccgaaggatgaacctaagttggcacttccgcttttgttgctc
atagcgcagcatcgtgctctggttgtcataaatgcagatgcaccatacattaagatggtc
agtgagcagtttgataggtgtcatgggactcttttgcagtatgtggagtttctgaacagt
gctctaactccaactactgcctatgctcaactgatacctccgctagaagatcttgtacac
aaataccaccttgacccagaggtggcgttcttgatatatcgtcctgtcatgaggctgttt
aagtgtgcaagtggctctgaacctgatgtattctggccatgtaataatatcaaagagaca
agtatgtcaaacacacagtctgaatcttcaatcccaactactgaactggttctggatctt
ggttacccgcgcaagcctatcatgtggtcagagcttcttgatacagtcaaagaagtgttg
ccttcgaaagcgtggaatagcttatctcccgatctatatgccacattttggggactcaca
ctttatgatctgtatgtccctaaaagtcgttatgattctgaaatcgccaaacaacatgcc
gctcttaaagcattagaagaactttcagacaactctagttcggctattaccaaaaggaaa
aaggataaggaacgcattcaagagttgctagatcgtttgactcatgaactccgcaagcat
gaggaaaatgccgcatctgtgcgccagcggcttgcccgggaaaaagacaagtggctcagc
tcctgtcctgatactctgaaaattaatatggaatttcttcagcgctgtatttttcctcga
tgcattttcagcatgctagacgctgtttactgtgcccagtttgtgcgcactctacattct
cttggcaccccattttttaacactgttaatcatattgatgtcctaatatgcaagacctta
caaccaatgatctgctgttgcaccgaatacgaagctggcagacttggaaggtttttgttt
gagactttagagatggcttatcattggaagaagaaggagtcaacatatgaacgcgagtgt
ggaaatatgccagggtttgccgtctactacagatacccaaacagccaacgcgtcacatat
ggccagttcgtcagagtacactggaaatggagctgtagaataactcgattgctgatacag
tgcctggaatcaaatgagtacatggaaattcgaaatgctcttattatgttgacgaaaatt
tcaagtgttttcccagttactcgaaaaagtgggattaatcttgaaaagcgggtagctaaa
atcaaaggggatgagagagaggacctcaaggtattggctacaggtgttgctgcagctttg
gcttcacgaaagagtttctgggttaccgatgaagagttctgtatgggttatgttgatcta
aaacctgcagctgtaacagcttcaaaaccgttaggtgttacagtaccaaatggttcttct
cttaaagctcctcaaatggagtctgctgtaatgaagaatagcacgattgcaggccaactt
aatgattctggaaatctgaataaggacccaatcttgagggcaagacctctagatgggaga
ctggacagaacagaaagcatcacagtaccaaaatctgatccagagcagccaaagctaaaa
ggtggctcattaacaaatggtctggagatacaatgtgtgtccactgttgcagtaccatct
gggatgatccagaagcatacagatgatcctacaaaaggccaatgtgatgagaccatggct
aaagttgctcaaaagcccggggactccgagctgagggctacaattaaaagatcaattggc
gctcctcttacaaaacagtctaaacatgacggaattaaggatgaaaataaatctgttaaa
cctgtcactagacatgctagtcctcttgtaacatcatccagtgaaagagatctccctgcg
catcctgcggatggtaggcaaagtgcaccctcttccactgctacaacaaatggtaacacg
gtgccgctgtcctctaaagtttcaaaagcggaaggtggtgctactaggccctctgaacct
agggtttcagctggaaaagaaatagatgatgtcgaagcttctaaaactgcaaatttgtcg
tcctttccagaagattctctgactgcttcaaagtctatggacaagcagcaaaagagggcc
attccatctgaagaattggataggctgagcaaaagaaggaaagacaataatgtaagagat
ggagatggtgaaggtcgattttctgatcgagataggtctatggatgcacggttccctcat
gctgatgtggacaaaactggaatagatgatcagggtctcagtagagccactgagaagctt
ttagacagatcgaaagaaaagggcagtgagaggtatgacagagaccacagagaaagattg
gaaagacctgataagtcaattggggatgaagttctcagtgaaaggcctagggataggtcg
atggaaagacatggaagagaacgttcaattgaaagagtccatgataggaattttgacaga
gtcgaaaaactaaaggatgataggtataaggatgataggagtaaacttcgttacagtgag
gcgcctttagaaaaatcccatatcgatgaccgtgaccgttttaacagacaaagcttgcct
ccaccgccgcctctgccttcccatatggttccccaatcagttagcggtagtcggagagat
gaagatgccgatagaagggtcagtaataccagacacatgcaaaggctctcccctagacac
gaagaaaaagaccgtagacggtcggaggagatttctttagcttcggatgatgcaaaacga
agaagagaagaggacttccgtgaaagaaagcgtgatgagcgagatggctcagcaataaag
gtggaggagagagaaaaagtaaacattgcaaaggatgacttggacacaaatgcagcatcg
aagaggaggaaacttaagcgagaccatctatcatcttctgatgtcagtgagtatccaatg
ggagtgcaacccctcccttccgcttctgttagtgtgtcacagtcattgtacgatgggagg
gaacgggcagaacggaaagtttcagcgatccaacgagccggtttccttgaggaaccttcg
ccgagaatgcatggtaaagaggctgccaacaagataacccgtcgcgatagtgaacaactt
tatgacagagaatgggacgacgacaagaggctgagaccagaacagaaacgaaggcatcgg
aaatag
DBGET
integrated database retrieval system
