Papaver somniferum (opium poppy): 113303442
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Entry
113303442 CDS
T05758
Name
(RefSeq) putative transcription elongation factor SPT5 homolog 1
KO
K15172
transcription elongation factor SPT5
Organism
psom
Papaver somniferum (opium poppy)
Pathway
psom03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
psom00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
113303442
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
psom03021
]
113303442
03019 Messenger RNA biogenesis [BR:
psom03019
]
113303442
Transcription machinery [BR:
psom03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
113303442
RNA polymerase I system
113303442
Messenger RNA biogenesis [BR:
psom03019
]
Eukaryotic type
mRNA processing factors
3' end processing
DRB sensitivity inducing factor (DSIF) complex
113303442
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
KOW1_SPT5
KOW2_Spt5
KOW6_SPT51-2
KOW4_SPT5
Spt5-NGN
KOW7_SPT5
KOW
KOW5_SPT5
KOWx_SPT5
Spt5_N
GPKOW_C
KOW6_SPT5
ProQ_C
PSP1
Motif
Other DBs
NCBI-GeneID:
113303442
NCBI-ProteinID:
XP_026408254
LinkDB
All DBs
Position
8:complement(148524007..148532008)
Genome browser
AA seq
1039 aa
AA seq
DB search
MPRRRDDDDFDGEEDDDYEEEEDLDDDEDVRGSRGGGKKRRRSDFIDDIAEEDDEEEEED
DYDDEDYGGGGGSSKKQKKKSSGGSQFFELEAYEDDSGNEDEEEEGEDDFIDHTDAELHE
EGGGRRIPRPLLSREDDAEEIEALERRIQQRYAKSNHAEYDEETTDVEQQSLLPSVKDPK
LWMVKCAIGHEREAAVCLMQKCIDRGPEMQIRSAIALDHLKNYIYIEADKEAHVREACKG
LRNIYAMKVMLVPIKEMTDVLSVESKAIDLAEDTWVRMKIGTYKNDLAKVVNVDNVRQRV
TVKLIPRIDLQAVANKSEGREVVKKKGFNPPPRFMNIEEAKEMGILVERRRDPDTNDYFW
KIEGMMFKEGFLYKTVSLKSIYSQNIRPTFDELEKFRKPGDGDGDVASLANLFRDRKKGH
FMKGDAVIVIKGDLKNLMGWVEKVEEDNVHIRPKMKDLPKTLAVNQKELCKYFKPGDHVK
IVQGAQEGATGMVVKVEGPILILVSDTTKEDIRVFADYVVESSEVTSGVTRIGDYELHDL
VLLDDTNFGVIIRVESEAFQVLKGVPDRPEVALIKLREIKSKIDKRNIIAQDRSKNTINV
KDVVRILEGPCKGKQGPVEHIYRGMLFINDRHHLEHAGYICAKSQACMVVGGSRVNGDRN
GGPLSRYPLRAAPRVPPSPRNTRGGRPPIDSGGRHNHRGGRGHDSLIGSTIKIRLGPFKG
YRGRVVDVTGTSVRIELDSQMRVVTVTRDQISDNITVTTTPRETPRYGMGSETPMHPSRT
PLHPYMTPMRDPGATPIHDGMRTPMRDRAWNPYAPMSPARDSWEDGNPGSWGASPQYQPG
TPPARSYEAPTPGTGWANTTSGSYSEAGTPRDNSPAYANAPSPYLPSTPGQPMTPGSASY
LPGTPGGQPMTPGGGGLDLMSPAIGGDADGPWYMPDILVNVRKSGEDSIIGVVRDVLPDG
SCKVSLGSGGNGEITTALPHELEMVVPRKSDKIKIMSGAQRGSTGKLIGIDGTDGIVKVD
DTLDVKILDMVILAKLAHS
NT seq
3120 nt
NT seq
+upstream
nt +downstream
nt
atgccacggcggcgtgacgatgatgattttgatggtgaagaagatgatgattatgaagaa
gaagaagatcttgatgatgatgaagatgtaagagggagtcgtggtgggggtaagaaacgg
agaagatccgattttattgatgatattgctgaagaagatgatgaggaggaagaagaagat
gattatgatgatgaagattatggtggtggtggtggtagtagtaagaaacagaagaaaaaa
tcatctggtggttctcagttttttgaacttgaagcatatgaagatgattcgggcaatgaa
gatgaggaagaagaaggcgaggatgactttatagaccacactgatgctgaattgcacgaa
gaaggtggtggtagaagaataccacgtcctctgttatcccgtgaggatgacgcagaagag
attgaagctctcgagagaagaattcagcaacggtatgctaagtctaaccatgcagaatat
gatgaagaaaccactgatgttgaacaacaatctcttttgccatcagttaaggacccaaag
ttgtggatggtgaaatgtgcgattggacatgagagagaggcagctgtttgccttatgcag
aagtgtatcgatagaggtcctgagatgcagataagatctgctattgctcttgatcatctt
aagaactatatatacattgaagctgacaaggaggcccatgtgagagaggcttgcaagggt
cttcgaaatatatatgctatgaaagtcatgcttgttccaataaaagaaatgacagacgtt
ctttcagttgaaagcaaagccattgatctggctgaggatacgtgggtacggatgaagata
gggacgtataaaaatgatcttgcaaaggttgtgaacgtggacaatgtgcgtcagcgggta
acagttaagctaatcccaaggattgatttacaggcagttgctaataagtcggaaggcagg
gaagttgtgaagaaaaagggatttaatccccctccacgtttcatgaacattgaggaagca
aaagaaatgggtattctcgttgaacgtaggagggatccagatactaatgattacttttgg
aaaattgaaggaatgatgtttaaagaaggttttctatataaaacagtatcattgaaatcc
atttactcccagaacatacgcccgacttttgatgagcttgagaaattccgtaagcctgga
gatggagatggtgatgtagctagtctagccaatttattccgtgacaggaagaagggccac
tttatgaagggcgacgctgttattgttattaaaggggatctcaaaaatttgatggggtgg
gttgagaaagttgaggaagataatgtgcacatcagaccgaaaatgaaggacttacctaaa
acccttgcggtgaatcagaaggagctttgtaaatactttaaacctggtgatcatgtgaag
attgttcaaggggcccaggaaggtgctactggtatggtagtcaaggttgaaggtcccata
ctgatccttgtatctgatacaaccaaggaggatattcgagtatttgcagactatgtcgtt
gagagttctgaagtaacttctggtgtaactagaattggtgattacgagttgcatgatctt
gtgttacttgatgacacaaacttcggggtaattatacgtgtagagagtgaagcattccag
gtactgaagggagttccggatagacctgaagttgcacttataaaattgagggagataaaa
agcaagattgataagaggaacattattgcacaagatcggtccaaaaacactatcaatgtg
aaagatgttgtgaggattctggagggaccttgcaaaggtaagcaaggtcctgttgaacac
atatatagaggaatgttgttcataaatgaccggcatcacctggagcatgctggttatatt
tgtgcaaagtcacaagcttgcatggtcgttggtggctcacgtgtgaatggcgatagaaat
ggtggtcctctctcaagatatcctctcagagctgcacctcgtgttcctccatctccaaga
aacactagaggaggaagacctcctatagactctggaggaagacataatcatagaggtgga
cgagggcatgattctttaattggcagtaccatcaaaattcgcctgggtccctttaagggg
taccgtgggcgcgtggtagatgttactggcacgtcagttcgaattgaattagactcacag
atgagggttgttacagttacccgtgaccaaatatctgacaatatcacagttacaactaca
ccccgtgaaacacctcgatatggaatgggaagcgaaacaccaatgcatccttctcgaact
ccactgcatccatatatgactcctatgagagatcctggagcaactccgatacatgatggt
atgcggacacctatgcgggatcgggcttggaatccttatgctcccatgagtccagcaagg
gatagctgggaagatggcaatcctggctcatggggagctagcccgcaatatcagcctgga
actcctcctgcacgatcttatgaagcaccaaccccaggtacaggctgggcaaatacaacc
agtggtagctacagtgaagctggaactccaagagataacagtccagcatatgcgaatgca
ccaagtccctatttgccgtcaactcctggtcaaccaatgacaccgggttcggcatcatac
ttacccggcactcctggtgggcagccaatgacgcctggaggtggtggtcttgatcttatg
tctcctgctattggtggagatgctgatgggccatggtatatgcccgacattttggtcaat
gtacggaaatctggagaagactccataataggtgttgtaagagacgtgcttccggatggt
tcttgcaaagtatcacttggatcaggtggaaacggagagatcaccacagctcttccacac
gaattggagatggtggtcccaaggaaatcagataagatcaaaatcatgagtggtgcccaa
cgtgggtcaactggtaaactgattggtatcgatgggacggatggcattgttaaagttgat
gacacacttgatgtgaagatattagacatggtcatcctagctaagctagcacattcttag
DBGET
integrated database retrieval system
