Papaver somniferum (opium poppy): 113303570
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Entry
113303570 CDS
T05758
Name
(RefSeq) general transcription and DNA repair factor IIH subunit TFB1-1-like
KO
K03141
transcription initiation factor TFIIH subunit 1
Organism
psom
Papaver somniferum (opium poppy)
Pathway
psom03022
Basal transcription factors
psom03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
psom00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
113303570
09124 Replication and repair
03420 Nucleotide excision repair
113303570
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
psom03021
]
113303570
03400 DNA repair and recombination proteins [BR:
psom03400
]
113303570
Transcription machinery [BR:
psom03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
113303570
DNA repair and recombination proteins [BR:
psom03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
113303570
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BSD
PH_TFIIH
GRAM
SHOCT
Motif
Other DBs
NCBI-GeneID:
113303570
NCBI-ProteinID:
XP_026408400
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All DBs
Position
8:153384924..153398178
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AA seq
599 aa
AA seq
DB search
MASGQVVMHARYKNNGVRDPGVQGVLIMTEDKLDFSPDDPMPSAKLNVGFRSIKGHKFSR
EGSQRQALLMLTGSDKNYTFEFDRFTERDICRDFVGKVLGKIQAKESSASDAKVDPEKSA
TTLHDEQLRPEEMKLRMKLLAENSELQKLHKQFVIGGVLTEAEFWATRKKLLAVDASKMS
KQRLGFKSAMLADVRPLTDGRTNKVTFSLTPEIIQQIFTEKPAVHQAFLKFVPSKMTEKD
FWTKYCRAEFLHRTKNAVAAAAEAAEDEELAVFLKQDAILAGEARQKIRRVDPTLDMEAD
EGDDYIHLPDHGIFRDGSKEFTDSEYEQYKRTLAQDLNRHAAVVLEGRTLDMELGDTRTV
AEALAKSKKADLATQMSDEKANHNRSERASRMAEIEDLQTPNNLPFAPLHIKDPREYFDS
QQANALKALGDTAVGTKTINCNVSTAQAYGFLRKSISEMKVTGLSDPVIESEVARKVLIG
LSQQLSSTKYNLGKNPQESILDRLPKKTKEELLHFWISIQELLKHFWSSYPVTTTYLNTK
VSRLKDAMADIYPKLQGIKESAQSDFRHQVSLLVQPMVQALDAAFTHYDADLQKRSMRS
NT seq
1800 nt
NT seq
+upstream
nt +downstream
nt
atggcaagcggtcaagtagttatgcatgctaggtataagaacaatggtgtcagggatcct
ggcgttcaaggagttcttattatgacagaggacaaacttgatttctcacctgatgatcct
atgccatctgcaaaactcaatgttgggtttagatccattaaaggtcacaaatttagcagg
gagggaagccaaagacaagcgctactaatgcttacagggagcgataagaattacacattt
gagtttgatagatttactgaacgtgatatatgccgagattttgttggaaaggtccttgga
aagatccaagctaaggaatcatctgcatcggatgccaaagtggatcccgagaagtctgca
actacactgcatgatgaacagctccgtccagaagaaatgaagcttcggatgaaactgcta
gctgaaaatagtgagttgcagaagctgcataagcaatttgtaattggtggtgttttgact
gaagctgaattctgggccacaagaaagaaattgcttgctgttgatgccagcaagatgtct
aaacagcgattggggttcaaaagtgcgatgcttgcagatgtcaggccactgacagatggc
cggacaaacaaagtcactttcagcctgactccagaaattattcagcagattttcactgaa
aaaccagctgttcatcaggcatttctgaaatttgtcccgagcaagatgactgaaaaggat
ttctggacaaagtattgtagagcagagtttctccatagaacaaaaaatgctgttgcagct
gcggctgaagctgctgaagatgaggagctcgctgtcttcctgaagcaggatgccatattg
gccggtgaagctcgccagaagatcaggcgtgttgatccaacattagatatggaagctgat
gaaggggatgattacatacatcttccggatcatggaatttttcgcgatgggtccaaggag
tttactgattccgaatatgaacaatataagaggactctcgcacaagatcttaaccgacat
gcagcagtggtcttggaaggacggactttggatatggaactaggggacacacgaactgta
gcagaagcacttgccaagtccaaaaaggctgacttagctactcaaatgtctgatgagaag
gcaaatcacaatcgttcggaaagggcttctcgaatggctgaaattgaagatcttcaaaca
cctaataaccttccattcgcacctctgcatattaaggatccacgggagtactttgattct
caacaagctaatgcactcaaagccctaggagatacggcagttggaacaaaaacaatcaat
tgtaatgtgagcacggcacaagcatatggatttttgaggaagtcaatctctgagatgaaa
gtaacaggattgagtgatcctgtaattgagtccgaagttgctcgtaaggttcttattggt
ttgtctcagcagctatcgagtaccaaatataaccttgggaagaatccacaggaaagtatc
ctggatagacttccgaagaaaactaaagaagagctactgcacttctggatatccattcaa
gaattattgaagcatttctggtcatcatatcctgttacaacaacataccttaataccaag
gtaagcagactgaaggatgccatggcagatatttatcccaagctgcagggaattaaggaa
tccgcacaatcagattttaggcatcaagtttctcttctagttcaaccaatggttcaggct
ctggacgctgcatttactcattatgatgcagatttgcagaagagatcaatgaggagctga
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