Papaver somniferum (opium poppy): 113303769
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Entry
113303769 CDS
T05758
Name
(RefSeq) E3 ubiquitin-protein ligase COP1-like
KO
K10143
E3 ubiquitin-protein ligase RFWD2 [EC:
2.3.2.27
]
Organism
psom
Papaver somniferum (opium poppy)
Pathway
psom04120
Ubiquitin mediated proteolysis
psom04712
Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:
psom00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
113303769
09150 Organismal Systems
09159 Environmental adaptation
04712 Circadian rhythm - plant
113303769
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
psom04121
]
113303769
Enzymes [BR:
psom01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
113303769
Ubiquitin system [BR:
psom04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
113303769
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
113303769
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_CDC20-Fz
WD40_Prp19
WD40_WDHD1_1st
Beta-prop_EML_2
Beta-prop_TEP1_2nd
Beta-prop_RIG_2nd
WDR55
Beta-prop_EIPR1
Beta-prop_DCAF4
zf-C3HC4_2
WD40_MABP1-WDR62_2nd
Beta-prop_TEP1_C
Beta-prop_WDR19_1st
WD40_MABP1-WDR62_1st
EIF3I
Beta-prop_WDR90_POC16_2nd
Beta-prop_HPS5
zf-C3HC4
Beta-prop_EML
WD40_RFWD3
Beta-prop_CAF1B_HIR1
zf-C3HC4_3
zf-RING_UBOX
WD40_like
zf-RING_2
Beta-prop_SCAP
Beta-prop_WDR75_1st
Beta-prop_DCAF12
Beta-prop_WDR35_TULP_N
zf-C3HC4_4
Beta-prop_IFT140_1st
U-box
zf-RING_5
Beta-prop_SPT8
Beta-prop_IFT122_2nd
DUF1664
zf-RING_10
zf-Nse
Motif
Other DBs
NCBI-GeneID:
113303769
NCBI-ProteinID:
XP_026408637
LinkDB
All DBs
Position
1:complement(147494557..147499906)
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AA seq
689 aa
AA seq
DB search
MGGGSMGALVPSVKSEGKSEAVGASSEAVGAASTAMVEVGKQNEQVEEEGGSGRGGEMDK
DLLCPICMQIIKDAFLTACGHSFCYMCIITHLNNKNDCPCCGHYLTNNQLFPNFLLNKLL
KKTTARQIGKNASPVEYLRQSLQHGYEVPVKELDSLLSLLSEKKRRMEQEEAETNMKVLL
DFLHCLRKQKVEELTELQTDIQYIKEDINLVERQRMDLYRTRERYSVKMRMHMDDHAAVK
ARPLSIDKQSSGIISSGRTTQSGLGFGSLVNRKADPKPQESSQGYQKKEAMGGSDPPSVS
HSGLAMARKRRIHAQFNDLQECYLQKRRQWVSQTRNQQERSTYTSKREGYHAALEEFQSV
LTTFTRYSRLRVIAELRHGDLFHSANIVSSIEFDRDDELFATAGVSRRIKVFEFASVVNE
PADVHCPVVEMSTRSKLSCLSWNKFTKNHIASSDYEGIVTVWDVNTRQSVMEYEEHEKRA
WSVDFSRTEPSMLVSGSDDCKVKVWCTNQEASVLNIDMKANICCVKYNPGSSYHVAVGSA
DHQIHYYDLRNVSAPLHVFSGHRKAVSYVKFLSNKELASASTDSTLRLWDVKENVPVRTF
RGHTNEKNFVGLTVNSEYIACGSETNEVFVYHKAISKPAAGHKFGSSELDDTDDDAGSYF
ISAVCWKSDSPTMLTANSQGTIKVLVLAA
NT seq
2070 nt
NT seq
+upstream
nt +downstream
nt
atgggcgggggatcaatgggggcactagtaccatccgtgaaaagtgaaggtaaatcagaa
gcagttggagcttcatcagaagctgtaggtgctgcttcaacagctatggttgaagtgggg
aaacaaaatgaacaagtagaagaagaaggtgggagtggaagaggaggagaaatggataaa
gatttgttatgtccaatatgcatgcagataattaaagatgcatttcttacagcttgtgga
catagtttttgttatatgtgtatcattactcatcttaataacaaaaatgattgtccttgt
tgtggtcattacttaaccaataatcaactcttccccaattttcttctcaataagcttctg
aagaaaaccactgctcgccaaataggaaaaaatgcatctccagttgagtaccttcggcag
tcattgcaacatggttacgaggttccggtgaaggagctagatagcctattatcactcctt
tcagagaaaaagagaagaatggaacaagaggaagctgaaacaaatatgaaggttctgctt
gacttcttgcactgcttaaggaagcaaaaggtcgaagaattaactgagttgcaaactgat
attcagtacattaaagaggacataaatttagtcgagagacagagaatggacttataccga
acgagggagagatactcggtaaaaatgcggatgcatatggatgatcatgctgcagtaaaa
gcgcgaccactgtcgattgataagcaaagtagtgggattatttccagtggtcgtacaact
caatcaggattagggtttggcagtttggtaaataggaaagctgacccaaagcctcaagag
agctcccaaggttaccaaaagaaggaggcaatgggcggatcagatccaccaagcgtttct
cattctggattggctatggcaagaaagaggcgaatccatgctcagtttaacgatttacaa
gaatgttacttacaaaaaaggaggcaatgggtcagtcaaactcgtaaccagcaagagagg
agcacatatacctcaaaaagagaaggttatcatgccgccctcgaggagtttcagtctgtt
ctgactacctttacacgatacagtcgtttgagggtaattgcggagcttaggcatggagat
ttattccactcggctaatattgtatcaagtatagaatttgatcgggatgatgagttgttt
gcaactgccggagtttctcgacgcatcaaagtttttgaatttgcttcggtggttaatgaa
cctgcagatgtgcactgcccagttgtggagatgtctaccagatccaaactaagttgcctg
agctggaacaaattcaccaaaaaccacatagcaagtagtgattacgaaggaatagttact
gtttgggatgtaaatactcgtcagagtgtaatggaatacgaagaacacgaaaaacgagca
tggagtgttgatttttcgcgtacagagccttcaatgcttgtgtctggtagtgatgattgc
aaggttaaagtttggtgtaccaaccaagaagctagtgtactgaatatcgacatgaaagct
aatatttgttgcgtcaaatataatcctggttcaagctaccatgtggcggttggttcagct
gatcatcaaattcattattatgacttgagaaacgtcagtgccccactacatgttttcagt
ggccatcgaaaagctgtttcttatgtaaaattcttgtctaacaaggaactggcgtcagca
tctactgacagtacattacggttgtgggatgtaaaggaaaatgtgccggtgcgtacattt
agaggccacactaatgagaagaactttgtgggtctaacagtaaatagtgaatatatagct
tgtggaagtgaaacaaatgaagtttttgtttatcacaaggctatctcaaaacctgccgca
gggcataagtttggttcatctgaattagatgatactgatgatgatgcagggtcttacttc
ataagtgctgtttgttggaagagcgacagtccaacaatgttaactgccaacagtcaagga
actatcaaagtgctagttcttgctgcttaa
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