Papaver somniferum (opium poppy): 113304412
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Entry
113304412 CDS
T05758
Name
(RefSeq) probable NOT transcription complex subunit VIP2 isoform X1
KO
K12605
CCR4-NOT transcription complex subunit 2
Organism
psom
Papaver somniferum (opium poppy)
Pathway
psom03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psom00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
113304412
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psom03019
]
113304412
Messenger RNA biogenesis [BR:
psom03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
113304412
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
113304412
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NOT2_3_5_C
Motif
Other DBs
NCBI-GeneID:
113304412
NCBI-ProteinID:
XP_026409301
LinkDB
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Position
8:complement(17512227..17518685)
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AA seq
624 aa
AA seq
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MSGLLNSALNDSNSNLPDTTGRPFAASFSAQSASATPVYHHAGTVQGLHNMHGSFNIPGS
LTSRNSTMNGVPSGAVQQPTGSLSNGRFASNNIPIALSQMSHGSSQAHSGVGHRGGMGVS
PILGNAGSRMTSSMGNIVGGNNIGRSLSSGGGLSVAGLASRLNLAGNTGSGNLGLQGPHR
LMSGVIPQAPQMMSMLGNSYSNTGGPLSQSQVQGGNNSLSSMGMLGDMNSNDSSPFDLND
FPRLTGRPNSSGGPQGQLGSLRKQGVSPIVQQNQEFSIQNEDFPALPGFKGGNNDFPMDM
HQKEQLHDNAVSMMQSQHFPMGRSAGFSLGGTYSSHYQQQPQHSPSVSSAGVSFGHANNQ
DLLHLHGSDLFPTSHGSFHSQVQNSGQSNIGLRSVNSANSASGMGSYDQLIQQYQQLQNQ
SQFRMQQMSAANQSYREQNMKSLQATQSAADRFGLLGLLNVIRMTDPDLTSLTLGIDLTT
LGLNLNSMDDLHKKFGSPWSDEPAKGEPEFRVPECYYAKQPPVLQQKYFSKFGPETLFYI
FYSMPRDEAQLFAANELHTRGWIYHKELRIWLIRGPNMEPLVKTNTYERGPYLCFDPNTW
ETIRKDNFVLHYDMLEKRPMIPQH
NT seq
1875 nt
NT seq
+upstream
nt +downstream
nt
atgtccgggctactaaattctgctctcaacgattcaaattcgaatcttccagacaccaca
gggcgaccatttgcagcatctttttctgctcaatctgcttcagcgaccccagtttatcat
catgctggaactgtacaaggcttgcataacatgcatggaagcttcaacattcctggctca
cttacttcaagaaattctacaatgaatggtgtcccttcaggcgctgtccaacaaccaaca
gggagcctttctaatgggcgatttgcatcaaacaatattccgattgctctttctcagatg
tctcatggtagctcacaagcgcattcaggagtcggacacagaggaggaatgggagtctca
ccaattctggggaacgcaggctctcgaatgaccagctcgatggggaacattgttggtggt
aataatattgggagaagcttaagctctggcggaggtttatctgttgctggtctagcatcc
cgtttaaacttagcaggaaatactggatctgggaatttgggtctacaaggacctcacaga
ctaatgagtggtgttattccacaagcgccgcagatgatgtctatgttaggaaactcctat
tctaatactggaggtccgctatctcagagccaagtacaaggaggcaacaactcgttaagt
tctatgggaatgttaggtgatatgaactccaacgatagttctccttttgatcttaatgac
ttcccccggttgacaggccgccctaattcttccggaggtcctcaagggcaattaggctca
ctgcgcaagcaaggagttagccccattgttcaacaaaaccaggaatttagcatccagaat
gaagactttcctgctttacctggatttaaaggaggcaacaacgatttcccaatggatatg
catcagaaagaacagttacatgataatgctgtgtcgatgatgcagtcacagcacttccct
atgggaaggtctgcaggatttagcttgggaggtacatattcatctcactaccaacagcaa
ccacaacattctccatcagtgagtagtgctggtgtatcttttggccatgcaaataatcaa
gatcttcttcatttgcatggctctgatctattcccaacttctcatggtagtttccattca
caggttcagaatagcggacaatctaatattggattgagatctgtaaactcggcgaattct
gcttctggtatgggatcatatgatcagcttattcaacagtatcaacaacttcaaaatcag
tcccagtttcgcatgcaacagatgtcggcggcaaatcaatcatacagagaacagaatatg
aagtccttgcaggcaacacaatctgctgctgatcgttttggtttgcttggcctattaaat
gtcattagaatgacagatcctgatctcacatctcttacgctaggaattgatctaacaaca
cttggactaaatttaaactcaatggatgaccttcataaaaaatttggatctccatggtct
gacgagccagcaaaaggagaaccggaattcagagtgcctgaatgctattatgctaagcaa
ccgccggtactacagcaaaagtatttttcgaagttcgggcctgagacgttattttatata
ttttacagcatgccaagagacgaagctcaactatttgctgccaatgagctgcacacaaga
ggatggatctaccacaaagagctccggatatggttaattaggggtcctaacatggaacct
cttgtcaagacaaacacatatgagagaggaccctacctctgcttcgatcccaacacatgg
gaaactattcgcaaggataattttgtgctccattacgacatgttagagaagagaccgatg
atacctcaacattag
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